TCONS_00041828 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041828
Unique NameTCONS_00041828
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041828 ID=TCONS_00041828|Name=TCONS_00041828|organism=Clytia hemisphaerica|type=transcript|length=366bp
TTTTGTACGGTTTAGGTTTGACACCTCCACGGGTGAAACAATCAAGGTTA
AATTATCTAAGTACTGTCAAAGTTTCACGGTCTTTTTCGGGAGAAACTCA
TGGGCGGTAAATATTTGATGGTTTCAATTTAAAATTGCTCTTCATTTCAA
GCCGATGAACGTTTTTTGGTATATACACgacaaatatttatattttattt
agatAAGAATGTTTCATTGTATAGAATTAATTGTAAATAGTATTTGCTCT
cgttaatttatttttctttatgaaaaattacaaaTCGACCTTAGGCGACT
TGAGACGAAAAAAAGAAAGCCTGAAAATCTTGCTTTAATTCTTTTCTGCT
GAACTGTTTGGGAAAG
Run BLAST on NCBI

transcript from alignment at sc0003038:10398..10763

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041828 ID=TCONS_00041828|Name=TCONS_00041828|organism=Clytia hemisphaerica|type=transcript|length=366bp|location=Sequence derived from alignment at sc0003038:10398..10763 (Clytia hemisphaerica)
CTTTCCCAAACAGTTCAGCAGAAAAGAATTAAAGCAAGATTTTCAGGCTT
TCTTTTTTTCGTCTCAAGTCGCCTAAGGTCGAtttgtaatttttcataaa
gaaaaataaattaacgAGAGCAAATACTATTTACAATTAATTCTATACAA
TGAAACATTCTTatctaaataaaatataaatatttgtcGTGTATATACCA
AAAAACGTTCATCGGCTTGAAATGAAGAGCAATTTTAAATTGAAACCATC
AAATATTTACCGCCCATGAGTTTCTCCCGAAAAAGACCGTGAAACTTTGA
CAGTACTTAGATAATTTAACCTTGATTGTTTCACCCGTGGAGGTGTCAAA
CCTAAACCGTACAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025734XLOC_025734Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041828-exon-sc0003038-1491911889:10398..10763TCONS_00041828-exon-sc0003038-1491911889:10398..10763Clytia hemisphaericaexon
TCONS_00041828-exon-sc0003038-1510915933:10398..10763TCONS_00041828-exon-sc0003038-1510915933:10398..10763Clytia hemisphaericaexon
TCONS_00041828-exon-sc0003038-1575043694:10398..10763TCONS_00041828-exon-sc0003038-1575043694:10398..10763Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003038supercontigsc0003038:10398..10763 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.225973	0.220359	0	0	0	0	0.290524	0	0.190423	0	0	0.805619	2.22279	2.1007	1.66809	0.275403	0.169637	1.04323	4.0425	2.84121	6.09544	3.85779	2.52368	2.82667	0	0.21653	28.4408	18.3284	10.7849	10.3871
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041828 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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