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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041823 ID=TCONS_00041823|Name=TCONS_00041823|organism=Clytia hemisphaerica|type=transcript|length=1198bp
cgttcttTACCGTTTTTCTAGAGGAATTTTCTgcattttgacaaaaatat
gcaaaatggtaatgcccaaaaagTGAGTccaatttgatttctttttaatt
tctaaCGTGATTCTCTTTTAAATTTCAGGCGAAGAAAGTTCTGGATGAAG
CAAGAGATTCAACTAATTTGAACAACGCCAAATGTAATTTTGTGAAGAAA
CCCGGAAACGTATACTACTTGTACGAACGTAGTTCAGGAACAGTCTATTT
CTCCATGCTTGGACCACAGGAATGGACAGATTGTCCACACGTTTTCATGG
GCGCTTATCGATACGAGCAAGACAGAACTTGGACCAAAATGGAGGATATC
AAACGTAAAGATCAAGAACTAAAAGTCATCGATAACTTATTGACACGCGG
AGGTGTCCCTTCACTTGAGTACATTACCACTGGTCATGTGGAAGACCCTA
AAATTGAAGGAAGCGAACAGAGATGAAACCCTCCACTACGTACTGTCACT
TTGAATTATTTCCATATAAATTATTGATTCGTGTATATATTAAAACAGAT
TTTACGTGGTATTTTTATATGAATTCCCTATTGGAAAAGAAGATGTTGTT
TacggaagaaaaaaaacacaatatcAATTGCTATCAGAGAACTTGGGAAA
ATGTGAGCTTTTAAAATGATATTGTTGACGGGAGAGGAAAAACACTGTCA
TCTGTCAGCCAAGAGGAGCTGATACTTTAATACTTAAATCTATTCGTAAA
ATCACCGAGATTCCAGATGTAAAAGGTCATCCAGAGAAAATCTGGTGTTT
GTAACACCCATATAGTATTAAAGAATAATTgacatttttagaaaaaccaa
aattttgcgaattatGACCAATAGCAATAGCCCGTTCCTGATCGTTATAA
AGGAGCTCTGATATAATGACTCATCGGCAATATTAGtctttttttatcct
ttttgtaattttaggcTGTTTACTTTAATACCAAAGAAGTGGGTCATAAC
ATTGTATTCCagttgttcttatataattttttatactcttaggttccaaa
taaacggcctcTCCGCTTGTTAATTTCTCGAAAACTTCCAACCCCCAGAC
CTTATTATTATTAGGACcctcgtttattaatttttaagaacattttcagc
tttcaaaaagaaggtccccttattttgctctgaATAGCCTAATtctag Run BLAST on NCBI transcript from alignment at sc0003037:3730..5548- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041823 ID=TCONS_00041823|Name=TCONS_00041823|organism=Clytia hemisphaerica|type=transcript|length=1819bp|location=Sequence derived from alignment at sc0003037:3730..5548- (Clytia hemisphaerica)
CGTTCTTTACCGTTTTTCTAGAGGAATTTTCTGCATTTTGACAAAAATAT
GCAAAATGGTAATGCCCAAAAAGTGAGTCCAATTTGATTTCTTTTTAATT
TCTAACGTGATTCTCTTTTAAATTTCAGGCGAAGAAAGTTCTGGATGAAG
CAAGAGATTCAACTAATTTGAACAACGCCAAATGTAATTTTGTGAAGAAA
CCCGGAAACGTATACTACTTGTACGAACGTAGTTCAGGAACAGTCTATTT
CTCCATGCTTGGACCACAGGTACATCGATGTTTATTTTTTCTTGATCAAG
GTCTCATAAAAATTATTTATTGATGTAATTTGTAATAAATTAGGGCTAAA
GCCCTAACCATCATATATAGCAGGGTGACCAGCGATACTGGAAATACTTG
AAAATACTTGAATATACTGGAGAAAAAGATTGATACTTGATTATACTTGA
AATTTTGATAAAAGTGTTATTTTTCAAGTATATACTGGAAATGAAAATCT
CTAGTGCTGAAATATACTTGATTTCATCATTCATGATGCCGCGGAGGTCA
AATCCTGGATTGATGTCCAGCGCGGGATAACTCGCCACCCTTTTTCTTTA
TATTGTTTGTGAATATCCTTTTTCGTCGAGTCGATTTTAGTCGAGTATGT
ACTTGAATATACTTATTTTTCTTAGTCCAAGATACTTGAAAATTTTGAAA
ATATACTTGAAAAATGGAAAAAAATGTGTGAAAATGTACTTGATTATACT
GGAAATTGGATTCCCGAAATCGCTGGCCACCCTGATATAGTCAAATCATC
TCGGTACAAAGTAACGCAAAGTTCTCGGCGTTTACCAACAAAGCATTTTA
GTCATGCAAACTGGTGTTCACTTGTCGCTCTTTCTTTCAGGAATGGACAG
ATTGTCCACACGTTTTCATGGGCGCTTATCGATACGAGCAAGACAGAACT
TGGACCAAAATGGAGGATATCAAACGTAAAGATCAAGAACTAAAAGTCAT
CGATAACTTATTGACACGCGGAGGTGTCCCTTCACTTGAGTACATTACCA
CTGGTCATGTGGAAGACCCTAAAATTGAAGGAAGCGAACAGAGATGAAAC
CCTCCACTACGTACTGTCACTTTGAATTATTTCCATATAAATTATTGATT
CGTGTATATATTAAAACAGATTTTACGTGGTATTTTTATATGAATTCCCT
ATTGGAAAAGAAGATGTTGTTTACGGAAGAAAAAAAACACAATATCAATT
GCTATCAGAGAACTTGGGAAAATGTGAGCTTTTAAAATGATATTGTTGAC
GGGAGAGGAAAAACACTGTCATCTGTCAGCCAAGAGGAGCTGATACTTTA
ATACTTAAATCTATTCGTAAAATCACCGAGATTCCAGATGTAAAAGGTCA
TCCAGAGAAAATCTGGTGTTTGTAACACCCATATAGTATTAAAGAATAAT
TGACATTTTTAGAAAAACCAAAATTTTGCGAATTATGACCAATAGCAATA
GCCCGTTCCTGATCGTTATAAAGGAGCTCTGATATAATGACTCATCGGCA
ATATTAGTCTTTTTTTATCCTTTTTGTAATTTTAGGCTGTTTACTTTAAT
ACCAAAGAAGTGGGTCATAACATTGTATTCCAGTTGTTCTTATATAATTT
TTTATACTCTTAGGTTCCAAATAAACGGCCTCTCCGCTTGTTAATTTCTC
GAAAACTTCCAACCCCCAGACCTTATTATTATTAGGACCCTCGTTTATTA
ATTTTTAAGAACATTTTCAGCTTTCAAAAAGAAGGTCCCCTTATTTTGCT
CTGAATAGCCTAATTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041823-exon-sc0003037-1575043694:5280..5548 | TCONS_00041823-exon-sc0003037-1575043694:5280..5548 | Clytia hemisphaerica | exon |
| TCONS_00041823-exon-sc0003037-1575043694:3730..4658 | TCONS_00041823-exon-sc0003037-1575043694:3730..4658 | Clytia hemisphaerica | exon |
| TCONS_00041823-exon-sc0003037-1510915933:5280..5548 | TCONS_00041823-exon-sc0003037-1510915933:5280..5548 | Clytia hemisphaerica | exon |
| TCONS_00041823-exon-sc0003037-1510915933:3730..4658 | TCONS_00041823-exon-sc0003037-1510915933:3730..4658 | Clytia hemisphaerica | exon |
| TCONS_00041823-exon-sc0003037-1491911889:5280..5548 | TCONS_00041823-exon-sc0003037-1491911889:5280..5548 | Clytia hemisphaerica | exon |
| TCONS_00041823-exon-sc0003037-1491911889:3730..4658 | TCONS_00041823-exon-sc0003037-1491911889:3730..4658 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003037 | supercontig | sc0003037:3730..5548 - |
Blast
BLAST of TCONS_00041823 vs. Swiss-Prot (Human)
Match: CA050 (Uncharacterized protein C1orf50 OS=Homo sapiens GN=C1orf50 PE=1 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 1.255e-29 Identity = 47/92 (51.09%), Postives = 70/92 (76.09%), Query Frame = 3
Query: 126 QAKKVLDEARDSTNLNNAKCNFVKKPGNVYYLYERSSGTVYFSMLGPQEW-TDCPHVFMGAYRYEQDRTWTKMEDIKRKDQELKVIDNLLTR 398
QA+KVL++A NL++ CN VKKPGN+YYLY+R SG YFS++ P+EW T CPH F+GAY+ + D +WT EDI+++D ++ ++D LL++
Sbjct: 91 QARKVLEDAHRDANLHHVACNIVKKPGNIYYLYKRESGQQYFSIISPKEWGTSCPHDFLGAYKLQHDLSWTPYEDIEKQDAKISMMDTLLSQ 182
The following BLAST results are available for this feature:
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