TCONS_00041822 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041822
Unique NameTCONS_00041822
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length602

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041822 ID=TCONS_00041822|Name=TCONS_00041822|organism=Clytia hemisphaerica|type=transcript|length=602bp
CAGAGCTTTAATGAAAATACAAGTGTCCATTACAGAGATCGATTcgtttc
attctttcatttcatcatttgaaaattgaattatttgtCGATGAATCAAA
AACCGACGTTTTTCAATGGCAAAATCCAGCGCTTCCTCAAAGTCCATATC
TTCTTCGTCTCTAACTCTTTGCAAAGTTTGCATGATGGCTTTATGAGTTA
TATTCTTTTTCATTGCCCGTAGAAAAAGGATCTTGTATttataaatttca
ttaattGATAAACCAGTCTCTTTGCATTCGTTGAACATGCTCTCCCAGAT
ATTTATTGTTTCTTCATCACCTTGAGATTGTTCACTGTCATCAGAATCtt
catcattggacattgactCACTGTCTGGATGATCCTCATCTTCTTCCTCT
TCAGATTCTTCAGGGTGGGCTTTTGCAACATGGCGATTGTAGTTGCTTTT
TGTGGAAAAGGTCTTTTCGCAATCGTCACATTCATACATCGTCGCCCTTG
GTTTTGAACATTATGAAGAAATGGAATATTTTCTTGCCAATTTATAGGCC
AAATGCAAGAGGAATCCGATATAGGGTTTCTCTTTAGGATCTTGGATTCt
tg
Run BLAST on NCBI

transcript from alignment at sc0003037:155..876-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041822 ID=TCONS_00041822|Name=TCONS_00041822|organism=Clytia hemisphaerica|type=transcript|length=722bp|location=Sequence derived from alignment at sc0003037:155..876- (Clytia hemisphaerica)
CAGAGCTTTAATGAAAATACAAGTGTCCATTACAGAGATCGATTCGTTTC
ATTCTTTCATTTCATCATTTGAAAATTGAATTATTTGTCGATGAATCAAA
AACCGACGTTTTTCAATGGCAAAATCCAGCGCTTCCTCAAAGTCCATATC
TTCTTCGTCTCTAACTCTTTGCAAAGTTTGCATGATGGCTTTATGAGTTA
TATTCTTTTTCATTGCCCGTAGAAAAAGGATCTTGTATTTATAAATTTCA
TTAATTGATAAACCAGTCTCTTTGCATTCGTTGAACATGCTCTCCCAGAT
ATTTATTGTTTCTTCATCACCTTGAGATTGTTCACTGTCATCAGAATCTT
CATCATTGGACATTGACTCACTGTCTGGATGATCCTCATCTTCTTCCTCT
TCAGATTCTTCAGGGTGGGCTTTTGCAACATGGCGATTGTAGTTGCTTTT
TGTGGAAAAGGTCTTTTCGCAATCGTCACATTCATNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCAGATTCTTCAGGGTGGGCTTTTGCAACA
TGGCGATTGTAGTTGCTTTTTGTGGAAAAGGTCTTTTCGCAATCGTCACA
TTCATACATCGTCGCCCTTGGTTTTGAACATTATGAAGAAATGGAATATT
TTCTTGCCAATTTATAGGCCAAATGCAAGAGGAATCCGATATAGGGTTTC
TCTTTAGGATCTTGGATTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025728XLOC_025728Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041822-exon-sc0003037-1575043694:398..876TCONS_00041822-exon-sc0003037-1575043694:398..876Clytia hemisphaericaexon
TCONS_00041822-exon-sc0003037-1575043694:155..277TCONS_00041822-exon-sc0003037-1575043694:155..277Clytia hemisphaericaexon
TCONS_00041822-exon-sc0003037-1510915933:398..876TCONS_00041822-exon-sc0003037-1510915933:398..876Clytia hemisphaericaexon
TCONS_00041822-exon-sc0003037-1510915933:155..277TCONS_00041822-exon-sc0003037-1510915933:155..277Clytia hemisphaericaexon
TCONS_00041822-exon-sc0003037-1491911889:398..876TCONS_00041822-exon-sc0003037-1491911889:398..876Clytia hemisphaericaexon
TCONS_00041822-exon-sc0003037-1491911889:155..277TCONS_00041822-exon-sc0003037-1491911889:155..277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003037supercontigsc0003037:155..876 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.184829	0	0	1.75212	1.47012	2.85166	0.899303	1.3603	3.49986	1.05264	0.217297	1.61739	1.82466	0.0908292	0.319847	0.239468	0.186762	2.8832	1.65526	0.517798	0	0	0	0.997526	1.17316	0.188133	0	0.100197	0.143304
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top