TCONS_00041818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041818
Unique NameTCONS_00041818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041818 ID=TCONS_00041818|Name=TCONS_00041818|organism=Clytia hemisphaerica|type=transcript|length=323bp
CTTACCCGGACATGGCTTTGCATTGCAATTCCGAACAACATTATCAGATT
CTGAACAATCCAATCCACCATGCTGAGGTGCAGGATTAGTACATGTTCTT
GttctattttgctgaccagcACCACATGATGCACTGCACTTTCCCCATGA
GCCCCATTTCGACCATTTGCCATCGACTGAGAAATATATTAAATTAGTGG
TTGATAGGATGTGGTTGATCGAAAAGGGAGCGTTTCTGATTATTCTAGTA
GGTAGCCACAAACTTTTCGGTTGACGGACCTTTCTAATAACGGACCCACG
GATTTTCCCCGATCGATGTTTTC
Run BLAST on NCBI

transcript from alignment at sc0003036:13827..14537+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041818 ID=TCONS_00041818|Name=TCONS_00041818|organism=Clytia hemisphaerica|type=transcript|length=711bp|location=Sequence derived from alignment at sc0003036:13827..14537+ (Clytia hemisphaerica)
CTTACCCGGACATGGCTTTGCATTGCAATTCCGAACAACATTATCAGATT
CTGAACAATCCAATCCACCATGCTGAGGTGCAGGATTAGTACATGTTCTT
GttctattttgctgaccagcACCACATGATGCACTACACTTCCCCCATGA
GCCCCATTCCGACCATTTGCCATCGActgaaaatttatgaaataaaGATA
TACACTACTAGCTAGGTCAAGCCAAAAATTACAATTATAATCAACTAATC
TCTATAATCTTAAATTCAAAAACTAAAGTTttaataatttccaaaaaatt
gctaTTAGTTTTTCGTTATACTGGGGtgcttgaaaaaaatgaaatttagg
aATACAAATTGAAATTCGTGTTGCTTACTTGGCACACTTGGGCATAGGCG
TGAATTacattttcgattttcatttttactatCAATGTCTGTACAATCCA
ATCCACCATACTGAGGTACAGGATTAGTACATGTTCTTGTTCTAGTTTTC
TGACCAGTGCCACATGATGCACTGCACTTTCCCCATGAGCCCCATTTCGA
CCATTTGCCATCGACTGAGAAATATATTAAATTAGTGGTTGATAGGATGT
GGTTGATCGAAAAGGGAGCGTTTCTGATTATTCTAGTAGGTAGCCACAAA
CTTTTCGGTTGACGGACCTTTCTAATAACGGACCCACGGATTTTCCCCGA
TCGATGTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025724XLOC_025724Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041818-exon-sc0003036-1491911889:13827..13951TCONS_00041818-exon-sc0003036-1491911889:13827..13951Clytia hemisphaericaexon
TCONS_00041818-exon-sc0003036-1510915933:13827..13951TCONS_00041818-exon-sc0003036-1510915933:13827..13951Clytia hemisphaericaexon
TCONS_00041818-exon-sc0003036-1575043694:13827..13951TCONS_00041818-exon-sc0003036-1575043694:13827..13951Clytia hemisphaericaexon
TCONS_00041818-exon-sc0003036-1491911889:14340..14537TCONS_00041818-exon-sc0003036-1491911889:14340..14537Clytia hemisphaericaexon
TCONS_00041818-exon-sc0003036-1510915933:14340..14537TCONS_00041818-exon-sc0003036-1510915933:14340..14537Clytia hemisphaericaexon
TCONS_00041818-exon-sc0003036-1575043694:14340..14537TCONS_00041818-exon-sc0003036-1575043694:14340..14537Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003036supercontigsc0003036:13827..14537 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.7368	7.57826	5.56723	1.72353	11.287	8.9535	16.4031	13.1091	6.03124	6.17142	8.51229	7.62487	8.07136	8.38219	7.59809	9.6354	7.631	10.9157	6.61588	5.53844	4.7325	4.72279	9.51185	9.55185	42.5774	41.5552	2.13347	2.26616	8.26246	8.69302
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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