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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041810 ID=TCONS_00041810|Name=TCONS_00041810|organism=Clytia hemisphaerica|type=transcript|length=1461bp
AAAATTCTTATGaccctgaaaaagaaaaagcagaATATGATCCCACAAAA
CGTAAAGAACGACATCAAAAATCATACAACCCTGAGAAACGAAAGGCGAA
ATATGACTCTCAGAAGACCGAAATTGATCACAGCATGAgtaaaaatatga
aagattTTCAGAAATCTATGAAGTTTTCAATTGCTCAATGTCAAACCTGT
TTTGAATCCTGGCCAataaaaattacgtcaaaagtAAACTCAGTCAATGA
TTACATTTGTACGCGTTGCAAAAGAGACAAAGGAACTCCAAAAAAATTTA
GTGCTGATAATAATATGAAACCAAGTCCTGTACCAGAAGCATTGAAAGGT
CTCACGCAAGTTGAAGAAATGCTAATAGCTAGAGCTTTTCCTGTAATGCA
AGTGTACACCCGACCAAGAGGAGGTCAGAGAGCTTACAAAGGTCACGTTT
TGAATTTGCCTCACAATGTACAAAAAATTGCAGATGTCCTTCCAAGAGAA
CCCAGTGAAATCCCTgtgatgatttttaaaattaatgGGAAAAATAATAC
CTCAAAAGAACTTGTTGTTCGGCGTGAAAAAATCTTACAGGCATTATTAT
GGTTAAccgggaaaaatgaaaaaggtgAACCAAATAACTTTTTATATAGT
GAAATCTACATAAACATGGAAAGACTGCAAAAACTCCCCGAAAACGGATT
CATCAATTTACCAGATTTCCATGTACAAATGAACgagaaaaatgaaagtg
acacCAGcgtagaaaatgaaagtgatgaGGAAAATGAAGATGTCAGTGAA
AGCGAAGAATTGCCAGATTTGGGTCCAGTTGATGATGATAACGATGAACG
TGTTTTTGATGAAAACActgaaatgaaaagtttcttACCATCCAAACTAA
AGATAGCAAAGGAAGCTGATTTGaccaaaagtgaaattttgaataCAAAA
ACTGAAGTTGATATTGGAAGTTCTCCACTTAGTGAATTCAATACACCCTA
TTTAGCAAGTCTTGCATTTCCAACATTGTTTCCAGACACAAAAGGTGACC
CAACTAATCCTGCAATTATAAGGGAAATCGCAAAAAGTGAAACTGAGAGT
TTTGcggaaaaattgaaacatttgatTAAATTTGCAGAAGTTGATGACAA
AGGAAAATGGTCTTATAGATTTGCATCTCATCCAAGGTTTTCCTTTTGGG
GTTTCAATATGCTGTATAGAAAAAGATTGATTAgtcaaggaaattttttt
atcaagcaaAACCCAGGTGAAGCTAATTTGAGCATTGAAGATTTGCAAGA
TCTCGTTAGAGATAATGATCACTACATAGTAATGAAAAAACTACAAAGAT
ACTCAAAGAATGTAACAGGTACTAATGCTTATTGGTGCGATGTCAAGGAA
AAATTAAAAGCCACAATAACCCAAATGGGCACGCCAACTATATTTTGGAC
ATTGAGTATGG Run BLAST on NCBI protein sequence of TCONS_00041810-protein >TCONS_00041810-protein ID=TCONS_00041810-protein|Name=TCONS_00041810-protein|organism=Clytia hemisphaerica|type=polypeptide|length=486bp
NSYDPEKEKAEYDPTKRKERHQKSYNPEKRKAKYDSQKTEIDHSMSKNMK
DFQKSMKFSIAQCQTCFESWPIKITSKVNSVNDYICTRCKRDKGTPKKFS
ADNNMKPSPVPEALKGLTQVEEMLIARAFPVMQVYTRPRGGQRAYKGHVL
NLPHNVQKIADVLPREPSEIPVMIFKINGKNNTSKELVVRREKILQALLW
LTGKNEKGEPNNFLYSEIYINMERLQKLPENGFINLPDFHVQMNEKNESD
TSVENESDEENEDVSESEELPDLGPVDDDNDERVFDENTEMKSFLPSKLK
IAKEADLTKSEILNTKTEVDIGSSPLSEFNTPYLASLAFPTLFPDTKGDP
TNPAIIREIAKSETESFAEKLKHLIKFAEVDDKGKWSYRFASHPRFSFWG
FNMLYRKRLISQGNFFIKQNPGEANLSIEDLQDLVRDNDHYIVMKKLQRY
SKNVTGTNAYWCDVKEKLKATITQMGTPTIFWTLSM Run BLAST on NCBI transcript from alignment at sc0003032:10..1470 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041810 ID=TCONS_00041810|Name=TCONS_00041810|organism=Clytia hemisphaerica|type=transcript|length=1461bp|location=Sequence derived from alignment at sc0003032:10..1470 (Clytia hemisphaerica)
CCATACTCAATGTCCAAAATATAGTTGGCGTGCCCATTTGGGTTATTGTG
GCTTTTAATTTTTCCTTGACATCGCACCAATAAGCATTAGTACCTGTTAC
ATTCTTTGAGTATCTTTGTAGTTTTTTCATTACTATGTAGTGATCATTAT
CTCTAACGAGATCTTGCAAATCTTCAATGCTCAAATTAGCTTCACCTGGG
TTttgcttgataaaaaaatttccttgacTAATCAATCTTTTTCTATACAG
CATATTGAAACCCCAAAAGGAAAACCTTGGATGAGATGCAAATCTATAAG
ACCATTTTCCTTTGTCATCAACTTCTGCAAATTTAatcaaatgtttcaat
ttttccgCAAAACTCTCAGTTTCACTTTTTGCGATTTCCCTTATAATTGC
AGGATTAGTTGGGTCACCTTTTGTGTCTGGAAACAATGTTGGAAATGCAA
GACTTGCTAAATAGGGTGTATTGAATTCACTAAGTGGAGAACTTCCAATA
TCAACTTCAGTTTTTGtattcaaaatttcacttttggtCAAATCAGCTTC
CTTTGCTATCTTTAGTTTGGATGGTaagaaacttttcatttcagTGTTTT
CATCAAAAACACGTTCATCGTTATCATCATCAACTGGACCCAAATCTGGC
AATTCTTCGCTTTCACTGACATCTTCATTTTCCtcatcactttcattttc
tacgCTGgtgtcactttcatttttctcGTTCATTTGTACATGGAAATCTG
GTAAATTGATGAATCCGTTTTCGGGGAGTTTTTGCAGTCTTTCCATGTTT
ATGTAGATTTCACTATATAAAAAGTTATTTGGTTcacctttttcattttt
cccggTTAACCATAATAATGCCTGTAAGATTTTTTCACGCCGAACAACAA
GTTCTTTTGAGGTATTATTTTTCCcattaattttaaaaatcatcacAGGG
ATTTCACTGGGTTCTCTTGGAAGGACATCTGCAATTTTTTGTACATTGTG
AGGCAAATTCAAAACGTGACCTTTGTAAGCTCTCTGACCTCCTCTTGGTC
GGGTGTACACTTGCATTACAGGAAAAGCTCTAGCTATTAGCATTTCTTCA
ACTTGCGTGAGACCTTTCAATGCTTCTGGTACAGGACTTGGTTTCATATT
ATTATCAGCACTAAATTTTTTTGGAGTTCCTTTGTCTCTTTTGCAACGCG
TACAAATGTAATCATTGACTGAGTTTacttttgacgtaatttttatTGGC
CAGGATTCAAAACAGGTTTGACATTGAGCAATTGAAAACTTCATAGATTT
CTGAAaatctttcatatttttacTCATGCTGTGATCAATTTCGGTCTTCT
GAGAGTCATATTTCGCCTTTCGTTTCTCAGGGTTGTATGATTTTTGATGT
CGTTCTTTACGTTTTGTGGGATCATATtctgctttttctttttcagggtC
ATAAGAATTTT Coding sequence (CDS) from alignment at sc0003032:10..1470 >TCONS_00041810 ID=TCONS_00041810|Name=TCONS_00041810|organism=Clytia hemisphaerica|type=CDS|length=1458bp|location=Sequence derived from alignment at sc0003032:10..1470 (Clytia hemisphaerica)
CATACTCAATGTCCAAAATATAGTTGGCGTGCCCATTTGGGTTATTGTGG
CTTTTAATTTTTCCTTGACATCGCACCAATAAGCATTAGTACCTGTTACA
TTCTTTGAGTATCTTTGTAGTTTTTTCATTACTATGTAGTGATCATTATC
TCTAACGAGATCTTGCAAATCTTCAATGCTCAAATTAGCTTCACCTGGGT
TttgcttgataaaaaaatttccttgacTAATCAATCTTTTTCTATACAGC
ATATTGAAACCCCAAAAGGAAAACCTTGGATGAGATGCAAATCTATAAGA
CCATTTTCCTTTGTCATCAACTTCTGCAAATTTAatcaaatgtttcaatt
tttccgCAAAACTCTCAGTTTCACTTTTTGCGATTTCCCTTATAATTGCA
GGATTAGTTGGGTCACCTTTTGTGTCTGGAAACAATGTTGGAAATGCAAG
ACTTGCTAAATAGGGTGTATTGAATTCACTAAGTGGAGAACTTCCAATAT
CAACTTCAGTTTTTGtattcaaaatttcacttttggtCAAATCAGCTTCC
TTTGCTATCTTTAGTTTGGATGGTaagaaacttttcatttcagTGTTTTC
ATCAAAAACACGTTCATCGTTATCATCATCAACTGGACCCAAATCTGGCA
ATTCTTCGCTTTCACTGACATCTTCATTTTCCtcatcactttcattttct
acgCTGgtgtcactttcatttttctcGTTCATTTGTACATGGAAATCTGG
TAAATTGATGAATCCGTTTTCGGGGAGTTTTTGCAGTCTTTCCATGTTTA
TGTAGATTTCACTATATAAAAAGTTATTTGGTTcacctttttcatttttc
ccggTTAACCATAATAATGCCTGTAAGATTTTTTCACGCCGAACAACAAG
TTCTTTTGAGGTATTATTTTTCCcattaattttaaaaatcatcacAGGGA
TTTCACTGGGTTCTCTTGGAAGGACATCTGCAATTTTTTGTACATTGTGA
GGCAAATTCAAAACGTGACCTTTGTAAGCTCTCTGACCTCCTCTTGGTCG
GGTGTACACTTGCATTACAGGAAAAGCTCTAGCTATTAGCATTTCTTCAA
CTTGCGTGAGACCTTTCAATGCTTCTGGTACAGGACTTGGTTTCATATTA
TTATCAGCACTAAATTTTTTTGGAGTTCCTTTGTCTCTTTTGCAACGCGT
ACAAATGTAATCATTGACTGAGTTTacttttgacgtaatttttatTGGCC
AGGATTCAAAACAGGTTTGACATTGAGCAATTGAAAACTTCATAGATTTC
TGAAaatctttcatatttttacTCATGCTGTGATCAATTTCGGTCTTCTG
AGAGTCATATTTCGCCTTTCGTTTCTCAGGGTTGTATGATTTTTGATGTC
GTTCTTTACGTTTTGTGGGATCATATtctgctttttctttttcagggtCA
TAAGAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041810-exon-sc0003032-1491911889:10..1470 | TCONS_00041810-exon-sc0003032-1491911889:10..1470 | Clytia hemisphaerica | exon |
| TCONS_00041810-exon-sc0003032-1510915933:10..1470 | TCONS_00041810-exon-sc0003032-1510915933:10..1470 | Clytia hemisphaerica | exon |
| TCONS_00041810-exon-sc0003032-1575043694:10..1470 | TCONS_00041810-exon-sc0003032-1575043694:10..1470 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003032 | supercontig | sc0003032:10..1470 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025476 | Helitron_helicase-like |
Blast
The following BLAST results are available for this feature:
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