TCONS_00041809 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041809
Unique NameTCONS_00041809
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041809 ID=TCONS_00041809|Name=TCONS_00041809|organism=Clytia hemisphaerica|type=transcript|length=508bp
GACCAAAATTGTAGACCCATGTAGTAATTAAAATGTCATATCGTAGGCTG
CCGTTACCTTATCGCTGAAAGACTCGTCGGCAAAAAATAACGACAAATGG
CTTGATGGCGCTTTTATTGCTTGGTATTCAATTCAggctttttttcagtt
tttacgctgttttatgttttgaaaagattGCTCAACTTTCAGATCAATTT
GATTGGTCAAATTTTAGAAGTATAATGTAATTAAGTTAAATCAACCAACA
AGTGCTGTTcgaaaaacttgaaagtttaGACAGAGTCTTTGaaataaagt
taaaataaaaagctTTATGCTTTTTAAGTCTCTATGACTTTTTTCTtaga
ccacgttcacacgctactgttccgtttcgcttCGAGACAAAaagaagcca
ttctattggttgcattcaagtgttacgtcacttctaaccaatatataatg
gcttcatttcgtttcggagcgaaacggaaccgtcacgtgcgaacatggtc
ttagttCT
Run BLAST on NCBI

transcript from alignment at sc0003029:11639..12146

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041809 ID=TCONS_00041809|Name=TCONS_00041809|organism=Clytia hemisphaerica|type=transcript|length=508bp|location=Sequence derived from alignment at sc0003029:11639..12146 (Clytia hemisphaerica)
AGaactaagaccatgttcgcacgtgacggttccgtttcgctccgaaacga
aatgaagccattatatattggttagaagtgacgtaacacttgaatgcaac
caatagaatggcttcttTTTGTCTCGaagcgaaacggaacagtagcgtgt
gaacgtggtctaAGAAAAAAGTCATAGAGACTTAAAAAGCATAAagcttt
ttattttaactttatttCAAAGACTCTGTCtaaactttcaagtttttcgA
ACAGCACTTGTTGGTTGATTTAACTTAATTACATTATACTTCTAAAATTT
GACCAATCAAATTGATCTGAAAGTTGAGCaatcttttcaaaacataaaac
agcgtaaaaactgaaaaaaagccTGAATTGAATACCAAGCAATAAAAGCG
CCATCAAGCCATTTGTCGTTATTTTTTGCCGACGAGTCTTTCAGCGATAA
GGTAACGGCAGCCTACGATATGACATTTTAATTACTACATGGGTCTACAA
TTTTGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025715XLOC_025715Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041809-exon-sc0003029-1491911889:11639..12146TCONS_00041809-exon-sc0003029-1491911889:11639..12146Clytia hemisphaericaexon
TCONS_00041809-exon-sc0003029-1510915933:11639..12146TCONS_00041809-exon-sc0003029-1510915933:11639..12146Clytia hemisphaericaexon
TCONS_00041809-exon-sc0003029-1575043694:11639..12146TCONS_00041809-exon-sc0003029-1575043694:11639..12146Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003029supercontigsc0003029:11639..12146 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.483813	0.115707	0.284445	1.17854	0.480037	0.379332	0.774427	0.722768	0.312652	0.124673	0.127137	0.685763	1.93798	1.46174	0.472976	0.663944	0.184615	0.478543	1.04503	3.02102	0.234198	0	0.136047	0.12423	0.127394	1.14575	0.163068	0	0	0.134179
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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