TCONS_00041808 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041808
Unique NameTCONS_00041808
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041808 ID=TCONS_00041808|Name=TCONS_00041808|organism=Clytia hemisphaerica|type=transcript|length=410bp
GTTCTTGAAAGACGCTGTCTGACCAAAAGCCTCAACAGAGCAATTCAAGT
GTGCAAAGATCCCCATGGGATTCTGCACTTAATTCAAGTTAATACCTTTC
ACATTTTGAAGTAAGATAGTCTTTCTTGTGAGACTGATGTTCTTGAAAGA
CGCTGTCTGACCAAAAGCCTCAACAGAGCAATTCAACACGTCTCCATAGT
TCAGCTTGTGGACTCGAACAACCACGCTCTTCGTGTCAAAGAGAACACTT
AATCCTTGTTCCCATAACAACTCAATGGCTTTTTTATTGTTAGGGCCTAC
ATGTACATGATGAGTATCATTGAAACTCAAGTTCAGAAATGAATGTTTGT
AAACTTCTGCTTTTGTGTATGTAATATTCCAAACAAGAATTGCTGATTTT
CCAACTTGGT
Run BLAST on NCBI

protein sequence of TCONS_00041808-protein

>TCONS_00041808-protein ID=TCONS_00041808-protein|Name=TCONS_00041808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
QVGKSAILVWNITYTKAEVYKHSFLNLSFNDTHHVHVGPNNKKAIELLWE
QGLSVLFDTKSVVVRVHKLNYGDVLNCSVEAFGQTASFKNISLTRKTILL
QNVKGINLN
Run BLAST on NCBI

transcript from alignment at sc0003029:57..466

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041808 ID=TCONS_00041808|Name=TCONS_00041808|organism=Clytia hemisphaerica|type=transcript|length=410bp|location=Sequence derived from alignment at sc0003029:57..466 (Clytia hemisphaerica)
ACCAAGTTGGAAAATCAGCAATTCTTGTTTGGAATATTACATACACAAAA
GCAGAAGTTTACAAACATTCATTTCTGAACTTGAGTTTCAATGATACTCA
TCATGTACATGTAGGCCCTAACAATAAAAAAGCCATTGAGTTGTTATGGG
AACAAGGATTAAGTGTTCTCTTTGACACGAAGAGCGTGGTTGTTCGAGTC
CACAAGCTGAACTATGGAGACGTGTTGAATTGCTCTGTTGAGGCTTTTGG
TCAGACAGCGTCTTTCAAGAACATCAGTCTCACAAGAAAGACTATCTTAC
TTCAAAATGTGAAAGGTATTAACTTGAATTAAGTGCAGAATCCCATGGGG
ATCTTTGCACACTTGAATTGCTCTGTTGAGGCTTTTGGTCAGACAGCGTC
TTTCAAGAAC

Coding sequence (CDS) from alignment at sc0003029:57..466

>TCONS_00041808 ID=TCONS_00041808|Name=TCONS_00041808|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at sc0003029:57..466 (Clytia hemisphaerica)
CAAGTTGGAAAATCAGCAATTCTTGTTTGGAATATTACATACACAAAAGC
AGAAGTTTACAAACATTCATTTCTGAACTTGAGTTTCAATGATACTCATC
ATGTACATGTAGGCCCTAACAATAAAAAAGCCATTGAGTTGTTATGGGAA
CAAGGATTAAGTGTTCTCTTTGACACGAAGAGCGTGGTTGTTCGAGTCCA
CAAGCTGAACTATGGAGACGTGTTGAATTGCTCTGTTGAGGCTTTTGGTC
AGACAGCGTCTTTCAAGAACATCAGTCTCACAAGAAAGACTATCTTACTT
CAAAATGTGAAAGGTATTAACTTGAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025714XLOC_025714Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041808-proteinTCONS_00041808-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041808-exon-sc0003029-1491911889:57..466TCONS_00041808-exon-sc0003029-1491911889:57..466Clytia hemisphaericaexon
TCONS_00041808-exon-sc0003029-1510915933:57..466TCONS_00041808-exon-sc0003029-1510915933:57..466Clytia hemisphaericaexon
TCONS_00041808-exon-sc0003029-1575043694:57..466TCONS_00041808-exon-sc0003029-1575043694:57..466Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003029supercontigsc0003029:57..466 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.176506	0.172121	0.199849	0.195521	0	0	0	0	0	0	0	0	1.98654	1.64275	0.100226	0.107558	0.0160984	0.135811	5.4723	5.45572	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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