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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041804 ID=TCONS_00041804|Name=TCONS_00041804|organism=Clytia hemisphaerica|type=transcript|length=1202bp
TTCCGAGTCATTAGGTATTTGAAGACCATTTTCAAGCATTATAATGTTAC
ACAATTCAAAAGCCTCCTTCGAGCAAATAAAGTCTTCTGAAAAGTCTTTG
CTACATACATCTTTCATAATATCCATATCGTTTTGATTAAAATTGAGCTT
ATAATCCTGGATTTCCGCATGCGACATCGATGGAGTGAAATAGAGTATAT
TTGGGCGTCCAGCAGGTCTAACCCTTCGATCTGAGGTTGACGAAAATCTT
ATTCTGTGGTTATTCCAAGATGACATTGACTGATCCAAATCGTTTTTTAT
TACAGGATAGAAACAAAACTTTATACATTCACAGTGAATGTTACTTGATG
TATCAAAGAAATCTTGATCAATTAGATCTTTAAAAAAGTTGATCCAAAAA
TTTGTACACGTTTTCCTTAATATAGACCACCATGCTTCGATCCGTTGATT
CGTAACAGATCGTCCGTACTTAAAACTTCTCTCTCCAGAACTAGTATCTT
GGTGATTCCTTCTCATGAACCTCTGACCAGCTGCAACATACACATTCTCT
GTACCCCTATCACCAACGATCTTTCGGGGAATGCCTCCAATTCTTTGAGC
AAAGTTCAAATAAAGTTTGCAGATAATTCCAGGATCCTTATTTGAAGGAA
CAATTTGGAGCCACAATATTCTGCGGCTAAAACCGTCTATCGCTCCATGG
ATAGAGAAGCCAAATGGCTTGAGTTTGTCATACCCATCAATATGCCAAAC
CCAATTCGGCCCGTATGACCAATATTGACGTCGCCTAAGAACTCTTCTAG
TTCTTCTTTCGACACCTACAGGATCTAAATATTTAATAATAAGGCGAACA
TTTTCTCTTGTAGTATGATAACCTTGTTGTATACACCTTTGGTGCATTAA
ACGATACCCTAAAAGGGAGCCACTACCACGAAGTTCATTCTGGATAAAAG
CAATAACTTCTCTTGTGTTTCTGCCATGTTTTCGTCGAAAAAGACCAAGT
GATCGGAGAATTCTGTGAAGCTGCCTGAGACTCAAGATTTTGTTGTGCAA
TTGTCTCAAAGTTGCAAGAATTTCAGAGTAGTCGTAGCCTCTATTGAAAT
ATTCCTGAACAAACTCATTAACATTCACCATCTTTCCAGCTTCTAGAATT
AACTGAAGATCATCAAAGAAAGTCTAAAATAAAGACCAGAGTTACATTGT
AC Run BLAST on NCBI protein sequence of TCONS_00041804-protein >TCONS_00041804-protein ID=TCONS_00041804-protein|Name=TCONS_00041804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
MVNVNEFVQEYFNRGYDYSEILATLRQLHNKILSLRQLHRILRSLGLFRR
KHGRNTREVIAFIQNELRGSGSLLGYRLMHQRCIQQGYHTTRENVRLIIK
YLDPVGVERRTRRVLRRRQYWSYGPNWVWHIDGYDKLKPFGFSIHGAIDG
FSRRILWLQIVPSNKDPGIICKLYLNFAQRIGGIPRKIVGDRGTENVYVA
AGQRFMRRNHQDTSSGERSFKYGRSVTNQRIEAWWSILRKTCTNFWINFF
KDLIDQDFFDTSSNIHCECIKFCFYPVIKNDLDQSMSSWNNHRIRFSSTS
DRRVRPAGRPNILYFTPSMSHAEIQDYKLNFNQNDMDIMKDVCSKDFSED
FICSKEAFELCNIIMLENGLQIPNDSE Run BLAST on NCBI transcript from alignment at sc0003028:1873..3074 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041804 ID=TCONS_00041804|Name=TCONS_00041804|organism=Clytia hemisphaerica|type=transcript|length=1202bp|location=Sequence derived from alignment at sc0003028:1873..3074 (Clytia hemisphaerica)
GTACAATGTAACTCTGGTCTTTATTTTAGACTTTCTTTGATGATCTTCAG
TTAATTCTAGAAGCTGGAAAGATGGTGAATGTTAATGAGTTTGTTCAGGA
ATATTTCAATAGAGGCTACGACTACTCTGAAATTCTTGCAACTTTGAGAC
AATTGCACAACAAAATCTTGAGTCTCAGGCAGCTTCACAGAATTCTCCGA
TCACTTGGTCTTTTTCGACGAAAACATGGCAGAAACACAAGAGAAGTTAT
TGCTTTTATCCAGAATGAACTTCGTGGTAGTGGCTCCCTTTTAGGGTATC
GTTTAATGCACCAAAGGTGTATACAACAAGGTTATCATACTACAAGAGAA
AATGTTCGCCTTATTATTAAATATTTAGATCCTGTAGGTGTCGAAAGAAG
AACTAGAAGAGTTCTTAGGCGACGTCAATATTGGTCATACGGGCCGAATT
GGGTTTGGCATATTGATGGGTATGACAAACTCAAGCCATTTGGCTTCTCT
ATCCATGGAGCGATAGACGGTTTTAGCCGCAGAATATTGTGGCTCCAAAT
TGTTCCTTCAAATAAGGATCCTGGAATTATCTGCAAACTTTATTTGAACT
TTGCTCAAAGAATTGGAGGCATTCCCCGAAAGATCGTTGGTGATAGGGGT
ACAGAGAATGTGTATGTTGCAGCTGGTCAGAGGTTCATGAGAAGGAATCA
CCAAGATACTAGTTCTGGAGAGAGAAGTTTTAAGTACGGACGATCTGTTA
CGAATCAACGGATCGAAGCATGGTGGTCTATATTAAGGAAAACGTGTACA
AATTTTTGGATCAACTTTTTTAAAGATCTAATTGATCAAGATTTCTTTGA
TACATCAAGTAACATTCACTGTGAATGTATAAAGTTTTGTTTCTATCCTG
TAATAAAAAACGATTTGGATCAGTCAATGTCATCTTGGAATAACCACAGA
ATAAGATTTTCGTCAACCTCAGATCGAAGGGTTAGACCTGCTGGACGCCC
AAATATACTCTATTTCACTCCATCGATGTCGCATGCGGAAATCCAGGATT
ATAAGCTCAATTTTAATCAAAACGATATGGATATTATGAAAGATGTATGT
AGCAAAGACTTTTCAGAAGACTTTATTTGCTCGAAGGAGGCTTTTGAATT
GTGTAACATTATAATGCTTGAAAATGGTCTTCAAATACCTAATGACTCGG
AA Coding sequence (CDS) from alignment at sc0003028:1873..3074 >TCONS_00041804 ID=TCONS_00041804|Name=TCONS_00041804|organism=Clytia hemisphaerica|type=CDS|length=1131bp|location=Sequence derived from alignment at sc0003028:1873..3074 (Clytia hemisphaerica)
ATGGTGAATGTTAATGAGTTTGTTCAGGAATATTTCAATAGAGGCTACGA
CTACTCTGAAATTCTTGCAACTTTGAGACAATTGCACAACAAAATCTTGA
GTCTCAGGCAGCTTCACAGAATTCTCCGATCACTTGGTCTTTTTCGACGA
AAACATGGCAGAAACACAAGAGAAGTTATTGCTTTTATCCAGAATGAACT
TCGTGGTAGTGGCTCCCTTTTAGGGTATCGTTTAATGCACCAAAGGTGTA
TACAACAAGGTTATCATACTACAAGAGAAAATGTTCGCCTTATTATTAAA
TATTTAGATCCTGTAGGTGTCGAAAGAAGAACTAGAAGAGTTCTTAGGCG
ACGTCAATATTGGTCATACGGGCCGAATTGGGTTTGGCATATTGATGGGT
ATGACAAACTCAAGCCATTTGGCTTCTCTATCCATGGAGCGATAGACGGT
TTTAGCCGCAGAATATTGTGGCTCCAAATTGTTCCTTCAAATAAGGATCC
TGGAATTATCTGCAAACTTTATTTGAACTTTGCTCAAAGAATTGGAGGCA
TTCCCCGAAAGATCGTTGGTGATAGGGGTACAGAGAATGTGTATGTTGCA
GCTGGTCAGAGGTTCATGAGAAGGAATCACCAAGATACTAGTTCTGGAGA
GAGAAGTTTTAAGTACGGACGATCTGTTACGAATCAACGGATCGAAGCAT
GGTGGTCTATATTAAGGAAAACGTGTACAAATTTTTGGATCAACTTTTTT
AAAGATCTAATTGATCAAGATTTCTTTGATACATCAAGTAACATTCACTG
TGAATGTATAAAGTTTTGTTTCTATCCTGTAATAAAAAACGATTTGGATC
AGTCAATGTCATCTTGGAATAACCACAGAATAAGATTTTCGTCAACCTCA
GATCGAAGGGTTAGACCTGCTGGACGCCCAAATATACTCTATTTCACTCC
ATCGATGTCGCATGCGGAAATCCAGGATTATAAGCTCAATTTTAATCAAA
ACGATATGGATATTATGAAAGATGTATGTAGCAAAGACTTTTCAGAAGAC
TTTATTTGCTCGAAGGAGGCTTTTGAATTGTGTAACATTATAATGCTTGA
AAATGGTCTTCAAATACCTAATGACTCGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041804-exon-sc0003028-1491911889:1873..3074 | TCONS_00041804-exon-sc0003028-1491911889:1873..3074 | Clytia hemisphaerica | exon |
| TCONS_00041804-exon-sc0003028-1510915933:1873..3074 | TCONS_00041804-exon-sc0003028-1510915933:1873..3074 | Clytia hemisphaerica | exon |
| TCONS_00041804-exon-sc0003028-1575043694:1873..3074 | TCONS_00041804-exon-sc0003028-1575043694:1873..3074 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003028 | supercontig | sc0003028:1873..3074 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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