TCONS_00041798 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041798
Unique NameTCONS_00041798
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041798 ID=TCONS_00041798|Name=TCONS_00041798|organism=Clytia hemisphaerica|type=transcript|length=523bp
GCCTAAAATTTCAAGGTCCTCAAATTCAGGTTTTCGTTTACAACATCTCA
TGAAATGCATCCTTACTGGCCCTTCCTTTCTATTTCTGTGTTCTTTAAAG
CGGGTGATCACGTGTCGAGCAGTTTGCCCAACATAGCAAGAATTACATCT
TGGACaagaaattttataaatcaCTCCACTTTTCAGTTCTCTTTTGATAG
AAGGTTTAAGGCTAGGAAGGGTTGTTTTGAGCTTCTAAGTGTGACCACTG
GTTGTACTGGTGCTCCACACTTGTGAAGATGGTTAATAAAGTTATCAGTC
ACTTTTACCACGATATTCCACGAAGAACTTTACTTTAGCTTGCTTTTGTT
CTGGCTCCTGGTTTGACGTTAATAATTGctcgttttcttttgaaatgatt
ttctcGATGGTTGAAGAAATGATTGGGTCATAAAATTCTGGTGGATACTG
GTTCTTCTCTAACATCGACTTAGCCCTTTGAAGGCTTTCATGAAAGTGGC
GCCAGTGACTGCAAGCTCTGTAT
Run BLAST on NCBI

transcript from alignment at sc0003025:4266..4788

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041798 ID=TCONS_00041798|Name=TCONS_00041798|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at sc0003025:4266..4788 (Clytia hemisphaerica)
ATACAGAGCTTGCAGTCACTGGCGCCACTTTCATGAAAGCCTTCAAAGGG
CTAAGTCGATGTTAGAGAAGAACCAGTATCCACCAGAATTTTATGACCCA
ATCATTTCTTCAACCATCgagaaaatcatttcaaaagaaaacgagCAATT
ATTAACGTCAAACCAGGAGCCAGAACAAAAGCAAGCTAAAGTAAAGTTCT
TCGTGGAATATCGTGGTAAAAGTGACTGATAACTTTATTAACCATCTTCA
CAAGTGTGGAGCACCAGTACAACCAGTGGTCACACTTAGAAGCTCAAAAC
AACCCTTCCTAGCCTTAAACCTTCTATCAAAAGAGAACTGAAAAGTGGAG
tgatttataaaatttcttGTCCAAGATGTAATTCTTGCTATGTTGGGCAA
ACTGCTCGACACGTGATCACCCGCTTTAAAGAACACAGAAATAGAAAGGA
AGGGCCAGTAAGGATGCATTTCATGAGATGTTGTAAACGAAAACCTGAAT
TTGAGGACCTTGAAATTTTAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025704XLOC_025704Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041798-exon-sc0003025-1491911889:4266..4788TCONS_00041798-exon-sc0003025-1491911889:4266..4788Clytia hemisphaericaexon
TCONS_00041798-exon-sc0003025-1510915933:4266..4788TCONS_00041798-exon-sc0003025-1510915933:4266..4788Clytia hemisphaericaexon
TCONS_00041798-exon-sc0003025-1575043694:4266..4788TCONS_00041798-exon-sc0003025-1575043694:4266..4788Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003025supercontigsc0003025:4266..4788 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.435904	0.742697	1.18865	1.04546	0.71528	0.988946	1.08471	0.345027	0.309809	0	0.886251	0.173095	0.755878	0.59935	0	0	0	0	0.381169	0.294103	0.577699	0.519732	0.668677	1.12476	0.326745	0	2.33189	0	0.313995
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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