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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041796 ID=TCONS_00041796|Name=TCONS_00041796|organism=Clytia hemisphaerica|type=transcript|length=966bp
GATAACTGCAATACACTGATATCATCCAAGAAATTACAGGAGAGACAAAA
AAAGACTGAGTACCAAGTTGCAAGCGGaggaaaaagaaatttccaaaaca
tGTGTTTTAGCTCCTCATTTTTGGTTTACTTCATCAATGAAATGCCGGGC
TCATTCTGTAGGTTATGTTTGGGAAAATATGAAACGAACCAATCTCCTAG
AAATACGATTACTGATAATTTTATTGGGCGTTTAAGAAATTGCGccatta
cttttttcaaaaatgatggTTTAATGGAAACATTCACAGTTTGTCGTGAA
TGCTTTAATGGTCTAAAACACattgaaaaaagtgaccctttgCGAATAAA
ATGGAGAAGGTCAACCTCACAAAAGAGGCGACATGTTGACATCGATGGCG
ATACTTCAGACTTAGATGAAAGTCAGTTAATTCAGGAGCAAGAAAGGCAA
GCGAAGGAGGCTGAAGAATTCAAGAAAAAGGTCGCGGAAGTTTGTGAATC
CGAGATTGGAAAACTTGAGCAACAGACGTTCATGAAAGATACTTCTGTTG
ACTCACTGGTCACATTTAATGATTTTGCCTTTTATAAAGAAGTAGAAAGA
ATTTGCCCAGTTTTAACGCATGCCATAAATGGAGCAATTAAAGGCGTTAA
TGCTCCATACAAACATGTTGGAGCTCGGACATTATGTGTGGGATTGCTTT
TTAAGGCAAGACTCTTCGATTCTCGAGCGAACGTGATATGCCATCGCAAT
GATCAGCTCTTTTTTGCATCTGGCATCAAGAAAAAATGCTTTAAGTGGTT
CAACAGGCTATGCATGACAAACTCTTACAGAACTGCCTTGAAAAAGAATA
AGGAGCTCGCGGTTGGTTTCGACGATGAAGTGAAGGAATGGAAAATGACC
TTGGAAACGATCCCTGAAGAGGAACCGGCGACCGTCGAATACACAGTAAG
ACTTTCTGTTAATGCC Run BLAST on NCBI protein sequence of TCONS_00041796-protein >TCONS_00041796-protein ID=TCONS_00041796-protein|Name=TCONS_00041796-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
DNCNTLISSKKLQERQKKTEYQVASGGKRNFQNMCFSSSFLVYFINEMPG
SFCRLCLGKYETNQSPRNTITDNFIGRLRNCAITFFKNDGLMETFTVCRE
CFNGLKHIEKSDPLRIKWRRSTSQKRRHVDIDGDTSDLDESQLIQEQERQ
AKEAEEFKKKVAEVCESEIGKLEQQTFMKDTSVDSLVTFNDFAFYKEVER
ICPVLTHAINGAIKGVNAPYKHVGARTLCVGLLFKARLFDSRANVICHRN
DQLFFASGIKKKCFKWFNRLCMTNSYRTALKKNKELAVGFDDEVKEWKMT
LETIPEEEPATVEYTVRLSVNA Run BLAST on NCBI transcript from alignment at sc0003025:5469..7344+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041796 ID=TCONS_00041796|Name=TCONS_00041796|organism=Clytia hemisphaerica|type=transcript|length=1876bp|location=Sequence derived from alignment at sc0003025:5469..7344+ (Clytia hemisphaerica)
GATAACTGCAATACACTGATATCATCCAAGAAATTACAGGAGAGACAAAA
AAAGACTGAGTACCAAGTTGCAAGCGGaggaaaaagaaatttccaaaaca
tGTGTTTTAGCTCCTCATTTTTGGTTTACTTCATCAATGAAATGCCGGGC
TCATTCTGTAGGTTATGTTTGGGAAAATATGAAACGAACCAATCTCCTAG
AAATACGATTACTGATAATTTTATTGGGCGTTTAAGAAATTGCGccatta
cttttttcaaaaatgatggTTTAATGGAAACATTCACAGTTTGTCGTGAA
TGCTTTAATGGTCTAAAACACattgaaaaaagtgaccctttgCGAATAAA
ATGGAGAAGGTCAACCTCACAAAAGAGGCGACATGTTGACATCGATGGCG
ATACTTCAGACTTAGATGAAAGTCAGGTATGATGTAAATTTAGTATAGGA
AAGCACTGTTACGGGCAattttttatgttatttttagAAACTTATAGGAC
AAGGTATTTAATCATTACTCGAATGTTTTCCCCAATTAGAGAGGCCCCCa
agcggacccaaaattcacgccatcatgcctcaaacaaaaaactgattttc
acgatcacggcTGATGCAAATTTTCATGATCATGcatattttagaaattt
cacgccatcacgccaatcgCTTGGGGGGGGGTTGTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNtacgggatttgacgaaaaaagggacgggaaaacggtatttt
aaaatcagacggtgacggtatttaggtacatttttgccctgtacaattat
tttttcaactttcgggattccgggattcagcaaaaatttttgacgggaaa
acggtatttcgaacccctacaaacccccccccttGGGGGCTCATTAAACA
AGTGCATATTACGAtgttattgaaaatttttcatttcaatcagTTAATTC
AGGAGCAAGAAAGGCAAGCGAAGGAGGCTGAAGAATTCAAGAAAAAGGTC
GCGGAAGTTTGTGAATCCGAGATTGGAAAACTTGAGCAACAGACGTTCAT
GAAAGATACTTCTGTTGACTCACTGGTCACATTTAATGATTTTGCCTTTT
ATAAAGAAGTAGAAAGAATTTGCCCAGTTTTAACGCATGCCATAAATGGA
GCAATTAAAGGCGTTAATGCTCCATACAAGTAAACCTTTTACCTTTTATA
TTATTTCAAATGTTAATCTGATTGTTGATAGGAGAGAATAGAGATAACAA
TACGATTGTATGATCACGATGAAATAAAGTTTCTATGTCTCTAACAGTTT
TATTTCAGAAGAATTGAATTAAATACTTTTGAATTATTTCATATCTTTGG
AATTCTTCATTTGATTTTTCAGACATGTTGGAGCTCGGACATTATGTGTG
GGATTGCTTTTTAAGGCAAGACTCTTCGATTCTCGAGCGAACGTGATATG
CCATCGCAATGATCAGCTCTTTTTTGCATCTGGCATCAAGAAAAAATGCT
TTAAGTGGTTCAACAGGCTATGCATGACAAACTCTTACAGAACTGCCTTG
AAAAAGAATAAGGAGCTCGCGGTTGGTTTCGACGATGAAGTGAAGGAATG
GAAAATGACCTTGGAAACGATCCCTGAAGAGGAACCGGCGACCGTCGAAT
ACACAGTAAGACTTTCTGTTAATGCC Coding sequence (CDS) from alignment at sc0003025:5469..7344+ >TCONS_00041796 ID=TCONS_00041796|Name=TCONS_00041796|organism=Clytia hemisphaerica|type=CDS|length=2898bp|location=Sequence derived from alignment at sc0003025:5469..7344+ (Clytia hemisphaerica)
GATAACTGCAATACACTGATATCATCCAAGAAATTACAGGAGAGACAAAA
AAAGACTGAGTACCAAGTTGCAAGCGGaggaaaaagaaatttccaaaaca
tGTGTTTTAGCTCCTCATTTTTGGTTTACTTCATCAATGAAATGCCGGGC
TCATTCTGTAGGTTATGTTTGGGAAAATATGAAACGAACCAATCTCCTAG
AAATACGATTACTGATAATTTTATTGGGCGTTTAAGAAATTGCGccatta
cttttttcaaaaatgatggTTTAATGGAAACATTCACAGTTTGTCGTGAA
TGCTTTAATGGTCTAAAACACattgaaaaaagtgaccctttgCGAATAAA
ATGGAGAAGGTCAACCTCACAAAAGAGGCGACATGTTGACATCGATGGCG
ATACTTCAGACTTAGATGAAAGTCAGTTAATTCAGGAGCAAGAAAGGCAA
GCGAAGGAGGCTGAAGAATTCAAGAAAAAGGTCGCGGAAGTTTGTGAATC
CGAGATTGGAAAACTTGAGCAACAGACGTTCATGAAAGATACTTCTGTTG
ACTCACTGGTCACATTTAATGATTTTGCCTTTTATAAAGAAGTAGAAAGA
ATTTGCCCAGTTTTAACGCATGCCATAAATGGAGCAATTAAAGGCGTTAA
TGCTCCATACAAACATGTTGGAGCTCGGACATTATGTGTGGGATTGCTTT
TTAAGGCAAGACTCTTCGATTCTCGAGCGAACGTGATATGCCATCGCAAT
GATCAGCTCTTTTTTGCATCTGGCATCAAGAAAAAATGCTTTAAGTGGTT
CAACAGGCTATGCATGACAAACTCTTACAGAACTGCCTTGAAAAAGAATA
AGGAGCTCGCGGTTGGTTTCGACGATGAAGTGAAGGAATGGAAAATGACC
TTGGAAACGATCCCTGAAGAGGAACCGGCGACCGTCGAATACACAGTAAG
ACTTTCTGTTAATGCCGATAACTGCAATACACTGATATCATCCAAGAAAT
TACAGGAGAGACAAAAAAAGACTGAGTACCAAGTTGCAAGCGGaggaaaa
agaaatttccaaaacatGTGTTTTAGCTCCTCATTTTTGGTTTACTTCAT
CAATGAAATGCCGGGCTCATTCTGTAGGTTATGTTTGGGAAAATATGAAA
CGAACCAATCTCCTAGAAATACGATTACTGATAATTTTATTGGGCGTTTA
AGAAATTGCGccattacttttttcaaaaatgatggTTTAATGGAAACATT
CACAGTTTGTCGTGAATGCTTTAATGGTCTAAAACACattgaaaaaagtg
accctttgCGAATAAAATGGAGAAGGTCAACCTCACAAAAGAGGCGACAT
GTTGACATCGATGGCGATACTTCAGACTTAGATGAAAGTCAGTTAATTCA
GGAGCAAGAAAGGCAAGCGAAGGAGGCTGAAGAATTCAAGAAAAAGGTCG
CGGAAGTTTGTGAATCCGAGATTGGAAAACTTGAGCAACAGACGTTCATG
AAAGATACTTCTGTTGACTCACTGGTCACATTTAATGATTTTGCCTTTTA
TAAAGAAGTAGAAAGAATTTGCCCAGTTTTAACGCATGCCATAAATGGAG
CAATTAAAGGCGTTAATGCTCCATACAAACATGTTGGAGCTCGGACATTA
TGTGTGGGATTGCTTTTTAAGGCAAGACTCTTCGATTCTCGAGCGAACGT
GATATGCCATCGCAATGATCAGCTCTTTTTTGCATCTGGCATCAAGAAAA
AATGCTTTAAGTGGTTCAACAGGCTATGCATGACAAACTCTTACAGAACT
GCCTTGAAAAAGAATAAGGAGCTCGCGGTTGGTTTCGACGATGAAGTGAA
GGAATGGAAAATGACCTTGGAAACGATCCCTGAAGAGGAACCGGCGACCG
TCGAATACACAGTAAGACTTTCTGTTAATGCCGATAACTGCAATACACTG
ATATCATCCAAGAAATTACAGGAGAGACAAAAAAAGACTGAGTACCAAGT
TGCAAGCGGaggaaaaagaaatttccaaaacatGTGTTTTAGCTCCTCAT
TTTTGGTTTACTTCATCAATGAAATGCCGGGCTCATTCTGTAGGTTATGT
TTGGGAAAATATGAAACGAACCAATCTCCTAGAAATACGATTACTGATAA
TTTTATTGGGCGTTTAAGAAATTGCGccattacttttttcaaaaatgatg
gTTTAATGGAAACATTCACAGTTTGTCGTGAATGCTTTAATGGTCTAAAA
CACattgaaaaaagtgaccctttgCGAATAAAATGGAGAAGGTCAACCTC
ACAAAAGAGGCGACATGTTGACATCGATGGCGATACTTCAGACTTAGATG
AAAGTCAGTTAATTCAGGAGCAAGAAAGGCAAGCGAAGGAGGCTGAAGAA
TTCAAGAAAAAGGTCGCGGAAGTTTGTGAATCCGAGATTGGAAAACTTGA
GCAACAGACGTTCATGAAAGATACTTCTGTTGACTCACTGGTCACATTTA
ATGATTTTGCCTTTTATAAAGAAGTAGAAAGAATTTGCCCAGTTTTAACG
CATGCCATAAATGGAGCAATTAAAGGCGTTAATGCTCCATACAAACATGT
TGGAGCTCGGACATTATGTGTGGGATTGCTTTTTAAGGCAAGACTCTTCG
ATTCTCGAGCGAACGTGATATGCCATCGCAATGATCAGCTCTTTTTTGCA
TCTGGCATCAAGAAAAAATGCTTTAAGTGGTTCAACAGGCTATGCATGAC
AAACTCTTACAGAACTGCCTTGAAAAAGAATAAGGAGCTCGCGGTTGGTT
TCGACGATGAAGTGAAGGAATGGAAAATGACCTTGGAAACGATCCCTGAA
GAGGAACCGGCGACCGTCGAATACACAGTAAGACTTTCTGTTAATGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041796-exon-sc0003025-1491911889:5469..5894 | TCONS_00041796-exon-sc0003025-1491911889:5469..5894 | Clytia hemisphaerica | exon |
| TCONS_00041796-exon-sc0003025-1510915933:5469..5894 | TCONS_00041796-exon-sc0003025-1510915933:5469..5894 | Clytia hemisphaerica | exon |
| TCONS_00041796-exon-sc0003025-1575043694:5469..5894 | TCONS_00041796-exon-sc0003025-1575043694:5469..5894 | Clytia hemisphaerica | exon |
| TCONS_00041796-exon-sc0003025-1491911889:6612..6847 | TCONS_00041796-exon-sc0003025-1491911889:6612..6847 | Clytia hemisphaerica | exon |
| TCONS_00041796-exon-sc0003025-1510915933:6612..6847 | TCONS_00041796-exon-sc0003025-1510915933:6612..6847 | Clytia hemisphaerica | exon |
| TCONS_00041796-exon-sc0003025-1575043694:6612..6847 | TCONS_00041796-exon-sc0003025-1575043694:6612..6847 | Clytia hemisphaerica | exon |
| TCONS_00041796-exon-sc0003025-1491911889:7041..7344 | TCONS_00041796-exon-sc0003025-1491911889:7041..7344 | Clytia hemisphaerica | exon |
| TCONS_00041796-exon-sc0003025-1510915933:7041..7344 | TCONS_00041796-exon-sc0003025-1510915933:7041..7344 | Clytia hemisphaerica | exon |
| TCONS_00041796-exon-sc0003025-1575043694:7041..7344 | TCONS_00041796-exon-sc0003025-1575043694:7041..7344 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003025 | supercontig | sc0003025:5469..7344 + |
Blast
The following BLAST results are available for this feature:
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