TCONS_00041794 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041794
Unique NameTCONS_00041794
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length652

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041794 ID=TCONS_00041794|Name=TCONS_00041794|organism=Clytia hemisphaerica|type=transcript|length=652bp
AATCACTTTCGTCCATCGTCTCCGTCTACCAAAAAGTATTGATATGTGTT
TGTGTATTCATTTATTTGGGATTTATTTCTAAAGTCTAACAAACCTGAAG
TTGAAATGCAGAATGAGAAAGAAGAATTGATTTAAGTTTACCTTCACGTA
GACGGTTCAATATGCCTTGGTAAGCTATATCAGTTATTCTCATTTGTTGG
TCAAGAAGAACAATGTGAGTCAGTTGTTTCCAAATTGATCTGCCTAATTC
CTTCTGAACAGATGATTCGCTGGTTGAGGAAGAGATGTCATCCTTGTTGT
AATTCCAAAACAAAGGTGTATCCAACACAGGTGGGAATTGGGTGAAATCA
CCAAAATAGATCATGTCTACACCACCAAATGGAACATCTGGATTACCATG
TTTCGCACGTGTGACGTTGCGGCTAAGTTTAGCTAAAAGCCTACATCCAA
CCATTGATACCTCATCAAGTAAGACTGTCTGAACACCTTCCCATTTATCC
TCAAGTTTAGAGATGCTAGTGTTCCTTAGCCCTGCGAGAGACGTTATTGT
GGTACCACCTATATGCTTTGCTGCAGAACCCATATAAGCACAAAGCCAAA
GTTGAGGTCTAATCCGTAATTCATCGTGTAAACGAACAACTGCTTTAATA
AC
Run BLAST on NCBI

protein sequence of TCONS_00041794-protein

>TCONS_00041794-protein ID=TCONS_00041794-protein|Name=TCONS_00041794-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
VIKAVVRLHDELRIRPQLWLCAYMGSAAKHIGGTTITSLAGLRNTSISKL
EDKWEGVQTVLLDEVSMVGCRLLAKLSRNVTRAKHGNPDVPFGGVDMIYF
GDFTQFPPVLDTPLFWNYNKDDISSSTSESSVQKELGRSIWKQLTHIVLL
DQQMRITDIAYQGILNRLREGKLKSILLSHSAFQLQVC
Run BLAST on NCBI

transcript from alignment at sc0003023:5976..6627

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041794 ID=TCONS_00041794|Name=TCONS_00041794|organism=Clytia hemisphaerica|type=transcript|length=652bp|location=Sequence derived from alignment at sc0003023:5976..6627 (Clytia hemisphaerica)
GTTATTAAAGCAGTTGTTCGTTTACACGATGAATTACGGATTAGACCTCA
ACTTTGGCTTTGTGCTTATATGGGTTCTGCAGCAAAGCATATAGGTGGTA
CCACAATAACGTCTCTCGCAGGGCTAAGGAACACTAGCATCTCTAAACTT
GAGGATAAATGGGAAGGTGTTCAGACAGTCTTACTTGATGAGGTATCAAT
GGTTGGATGTAGGCTTTTAGCTAAACTTAGCCGCAACGTCACACGTGCGA
AACATGGTAATCCAGATGTTCCATTTGGTGGTGTAGACATGATCTATTTT
GGTGATTTCACCCAATTCCCACCTGTGTTGGATACACCTTTGTTTTGGAA
TTACAACAAGGATGACATCTCTTCCTCAACCAGCGAATCATCTGTTCAGA
AGGAATTAGGCAGATCAATTTGGAAACAACTGACTCACATTGTTCTTCTT
GACCAACAAATGAGAATAACTGATATAGCTTACCAAGGCATATTGAACCG
TCTACGTGAAGGTAAACTTAAATCAATTCTTCTTTCTCATTCTGCATTTC
AACTTCAGGTTTGTTAGACTTTAGAAATAAATCCCAAATAAATGAATACA
CAAACACATATCAATACTTTTTGGTAGACGGAGACGATGGACGAAAGTGA
TT

Coding sequence (CDS) from alignment at sc0003023:5976..6627

>TCONS_00041794 ID=TCONS_00041794|Name=TCONS_00041794|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at sc0003023:5976..6627 (Clytia hemisphaerica)
GTTATTAAAGCAGTTGTTCGTTTACACGATGAATTACGGATTAGACCTCA
ACTTTGGCTTTGTGCTTATATGGGTTCTGCAGCAAAGCATATAGGTGGTA
CCACAATAACGTCTCTCGCAGGGCTAAGGAACACTAGCATCTCTAAACTT
GAGGATAAATGGGAAGGTGTTCAGACAGTCTTACTTGATGAGGTATCAAT
GGTTGGATGTAGGCTTTTAGCTAAACTTAGCCGCAACGTCACACGTGCGA
AACATGGTAATCCAGATGTTCCATTTGGTGGTGTAGACATGATCTATTTT
GGTGATTTCACCCAATTCCCACCTGTGTTGGATACACCTTTGTTTTGGAA
TTACAACAAGGATGACATCTCTTCCTCAACCAGCGAATCATCTGTTCAGA
AGGAATTAGGCAGATCAATTTGGAAACAACTGACTCACATTGTTCTTCTT
GACCAACAAATGAGAATAACTGATATAGCTTACCAAGGCATATTGAACCG
TCTACGTGAAGGTAAACTTAAATCAATTCTTCTTTCTCATTCTGCATTTC
AACTTCAGGTTTGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025700XLOC_025700Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041794-exon-sc0003023-1491911889:5976..6627TCONS_00041794-exon-sc0003023-1491911889:5976..6627Clytia hemisphaericaexon
TCONS_00041794-exon-sc0003023-1510915933:5976..6627TCONS_00041794-exon-sc0003023-1510915933:5976..6627Clytia hemisphaericaexon
TCONS_00041794-exon-sc0003023-1575043694:5976..6627TCONS_00041794-exon-sc0003023-1575043694:5976..6627Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041794-proteinTCONS_00041794-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003023supercontigsc0003023:5976..6627 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.240256	0.0780957	0.453383	0.354851	0.323998	0.512055	0	0.385568	0.0674863	0	0	0	0	0.221253	0.3638	0.195207	0.180359	0.308104	0	0.0890849	0.232293	0.113304	0.183648	0.166963	0.0859839	0.153477	0.329438	0	0.0888883	0.181126
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010285DNA_helicase_pif1-like
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0000723telomere maintenance
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0000723 telomere maintenance
molecular_function GO:0003678 DNA helicase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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