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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041784 ID=TCONS_00041784|Name=TCONS_00041784|organism=Clytia hemisphaerica|type=transcript|length=1982bp
aatatgAACATTTAATTAATTAAAAGTGTTCAAATTAAGTTAGTTGCTTC
AAATGAGCCTTTGATGGAGTGTGGGCCATTGCCAGAATGGTTAGGAAAGA
AGCGATGTATTTATGCGATCGATAAGTATGATGATAATCTTTGTGTTTGG
AGTTGTTTAGCGATATATAAGCGTTTAGAAAGTGGTAGAACTAATCAGGT
TGAAAAGCGAACATGTATAGCAGCTCTTGAATTAGCTAGAGATTATTATG
GAGATCTAACTTTGACGAACGAAACTGTTAGAGCAACAAAATTGATTGAT
TTTGAAGGCATTGCAAAGCATCATGATGTTAACATCATGCTTTATGAACC
AAAACAAATAGAGATTTAGCGGCTTGTGTATGGTAAACTTCAATATAAGA
AAGATTTACCTACGATGAATATTGGTTTGTTAGAGGGTCACTGTTTTTAT
ATTAAAGATGTAAGTATTTTAGCAAAACGATATGAATGTAAAGGATGTAA
GCAGATTTTTAAACAAAGTAATCATTTATTGAAACATTTGCAAAAGGATC
GATGTAACGGAGGAAAAACGAAGGAAATATGTAAAGGAAAACAGTTTAGA
CGGATTTTTAGCGCTTcagataatgtgttttatgGAGGTGATACAGGATT
TAGTTATACGGCTTGTCAGTGGATTGAGGCTGAAAGTTCAAAGTTAGGAA
AACACATCCATCACAAAATGTGCGGACATGGTGGAGAGAGACAGGTGATG
GTTATGATTAAAGACGATGAAGGGAAAGAACAGGCTTCTTTTTATCCTGT
AGACGGATATGAGCCAGAAACGAATACCGTGTATCAATATAACGGTTGTA
AATGGCACGGTCGTACATGTTTGGGAAATAGAACAAACAGACAGAAAAAG
TGCTATTATTCTACAAAGACTAGAGACTATCATATTGTAAATAATGGCTA
TAATTTGGTGAAGGTTTGGGAATGTGAGAAACCAGAGTTGAGTAACaagt
tttttgaatgaaaatttactCCTTATCCACATTTTATTGTGTATGATTTT
GAAGCATGAGTTTTACCTGAAAATATACGACCGACAGAAGATCTAACCTA
TATTCACAAGCAAGTAGCAGTTAGCGTTGCAATTCACGACAGTTTGAGTA
AAGAGCCAGTGTATCTTGAAGATGCAGATCCAAAAGAATTGACGCGACGA
TTTATATATCAGAAACAAGAAGCTATTATAGAGGACGTTGAAAAGATTTA
ACCTCGTCCTAGCGACTTTAAGATGTTACCTGAAAAAGCGTTGTAATGAG
TGGGTATTAAGTATTTAAGTAAGTACAAAAATCATGCTGAGTGTgttgtg
ttttgaaaaaaaaattagtaaacaACTTTTCTAGAGAAAATCCATGGTCT
Agtggttaaaaaaaattgaaaaagctgaacagagaagtaaaaaaattgtg
gtattttaatttgaaaagcTGTAAAAAATAAACATGGTAAAGTGTGGAAC
TTGTAAAGAAGAATTGACACAACAAAGAAAAGAACCTCGTTACCATAAAG
GTGAGGTAGTTGGATGGACGATATATACTGGatgtgcaaaaaatcaccaT
ATAACGACTGAATTCAATAAGAAATGATAATCAAatgctgaaatttttat
tttaaagaaaaagtttgtaatTTATTTGAATTTACACAAAGAATGTCCAA
TTCAATTCATCTATAGTAGAGTACATTAAAAACTGGAATCACATTGCGAC
GCTGTTGTGTATCGACCTGAAGTTCACttataatttccaaaaaagaatac
aaaataaaattgatattttttttcattttgacttgGGTTTAATTTTATGA
Acgtttatacacgtttttttttataagaacgtcaaaaatttttgaagcct
tcggatgtttttagttttttggatttgaagcctaaaaatgttcttaaaat
gttcttattttcagcattttttgagcattttg Run BLAST on NCBI protein sequence of TCONS_00041784-protein >TCONS_00041784-protein ID=TCONS_00041784-protein|Name=TCONS_00041784-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MNIGLLEGHCFYIKDVSILAKRYECKGCKQIFKQSNHLLKHLQKDRCNGG
KTKEICKGKQFRRIFSASDNVFYGGDTGFSYTACQWIEAESSKLGKHIHH
KMCGHGGERQVMVMIKDDEGKEQASFYPVDGYEPETNTVYQYNGCKWHGR
TCLGNRTNRQKKCYYSTKTRDYHIVNNGYNLVKVWECEKPELSNKFFE Run BLAST on NCBI transcript from alignment at sc0003019:750..2731 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041784 ID=TCONS_00041784|Name=TCONS_00041784|organism=Clytia hemisphaerica|type=transcript|length=1982bp|location=Sequence derived from alignment at sc0003019:750..2731 (Clytia hemisphaerica)
caaaatgctcaaaaaatgctgaaaataagaacattttaagaacattttta
ggcttcaaatccaaaaaactaaaaacatccgaaggcttcaaaaatttttg
acgttcttataaaaaaaaacgtgtataaacgTTCATAAAATTAAACCcaa
gtcaaaatgaaaaaaaatatcaattttattttgtattcttttttggaaat
tataaGTGAACTTCAGGTCGATACACAACAGCGTCGCAATGTGATTCCAG
TTTTTAATGTACTCTACTATAGATGAATTGAATTGGACATTCTTTGTGTA
AATTCAAATAAattacaaactttttctttaaaataaaaatttcagcatTT
GATTATCATTTCTTATTGAATTCAGTCGTTATAtggtgattttttgcaca
tCCAGTATATATCGTCCATCCAACTACCTCACCTTTATGGTAACGAGGTT
CTTTTCTTTGTTGTGTCAATTCTTCTTTACAAGTTCCACACTTTACCATG
TTTATTTTTTACAgcttttcaaattaaaataccacaatttttttacttct
ctgttcagctttttcaattttttttaaccacTAGACCATGGATTTTCTCT
AGAAAAGTtgtttactaatttttttttcaaaacacaacACACTCAGCATG
ATTTTTGTACTTACTTAAATACTTAATACCCACTCATTACAACGCTTTTT
CAGGTAACATCTTAAAGTCGCTAGGACGAGGTTAAATCTTTTCAACGTCC
TCTATAATAGCTTCTTGTTTCTGATATATAAATCGTCGCGTCAATTCTTT
TGGATCTGCATCTTCAAGATACACTGGCTCTTTACTCAAACTGTCGTGAA
TTGCAACGCTAACTGCTACTTGCTTGTGAATATAGGTTAGATCTTCTGTC
GGTCGTATATTTTCAGGTAAAACTCATGCTTCAAAATCATACACAATAAA
ATGTGGATAAGGagtaaattttcattcaaaaaacttGTTACTCAACTCTG
GTTTCTCACATTCCCAAACCTTCACCAAATTATAGCCATTATTTACAATA
TGATAGTCTCTAGTCTTTGTAGAATAATAGCACTTTTTCTGTCTGTTTGT
TCTATTTCCCAAACATGTACGACCGTGCCATTTACAACCGTTATATTGAT
ACACGGTATTCGTTTCTGGCTCATATCCGTCTACAGGATAAAAAGAAGCC
TGTTCTTTCCCTTCATCGTCTTTAATCATAACCATCACCTGTCTCTCTCC
ACCATGTCCGCACATTTTGTGATGGATGTGTTTTCCTAACTTTGAACTTT
CAGCCTCAATCCACTGACAAGCCGTATAACTAAATCCTGTATCACCTCca
taaaacacattatctgAAGCGCTAAAAATCCGTCTAAACTGTTTTCCTTT
ACATATTTCCTTCGTTTTTCCTCCGTTACATCGATCCTTTTGCAAATGTT
TCAATAAATGATTACTTTGTTTAAAAATCTGCTTACATCCTTTACATTCA
TATCGTTTTGCTAAAATACTTACATCTTTAATATAAAAACAGTGACCCTC
TAACAAACCAATATTCATCGTAGGTAAATCTTTCTTATATTGAAGTTTAC
CATACACAAGCCGCTAAATCTCTATTTGTTTTGGTTCATAAAGCATGATG
TTAACATCATGATGCTTTGCAATGCCTTCAAAATCAATCAATTTTGTTGC
TCTAACAGTTTCGTTCGTCAAAGTTAGATCTCCATAATAATCTCTAGCTA
ATTCAAGAGCTGCTATACATGTTCGCTTTTCAACCTGATTAGTTCTACCA
CTTTCTAAACGCTTATATATCGCTAAACAACTCCAAACACAAAGATTATC
ATCATACTTATCGATCGCATAAATACATCGCTTCTTTCCTAACCATTCTG
GCAATGGCCCACACTCCATCAAAGGCTCATTTGAAGCAACTAACTTAATT
TGAACACTTTTAATTAATTAAATGTTcatatt Coding sequence (CDS) from alignment at sc0003019:750..2731 >TCONS_00041784 ID=TCONS_00041784|Name=TCONS_00041784|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at sc0003019:750..2731 (Clytia hemisphaerica)
tcattcaaaaaacttGTTACTCAACTCTGGTTTCTCACATTCCCAAACCT
TCACCAAATTATAGCCATTATTTACAATATGATAGTCTCTAGTCTTTGTA
GAATAATAGCACTTTTTCTGTCTGTTTGTTCTATTTCCCAAACATGTACG
ACCGTGCCATTTACAACCGTTATATTGATACACGGTATTCGTTTCTGGCT
CATATCCGTCTACAGGATAAAAAGAAGCCTGTTCTTTCCCTTCATCGTCT
TTAATCATAACCATCACCTGTCTCTCTCCACCATGTCCGCACATTTTGTG
ATGGATGTGTTTTCCTAACTTTGAACTTTCAGCCTCAATCCACTGACAAG
CCGTATAACTAAATCCTGTATCACCTCcataaaacacattatctgAAGCG
CTAAAAATCCGTCTAAACTGTTTTCCTTTACATATTTCCTTCGTTTTTCC
TCCGTTACATCGATCCTTTTGCAAATGTTTCAATAAATGATTACTTTGTT
TAAAAATCTGCTTACATCCTTTACATTCATATCGTTTTGCTAAAATACTT
ACATCTTTAATATAAAAACAGTGACCCTCTAACAAACCAATATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041784-exon-sc0003019-1491911889:750..2731 | TCONS_00041784-exon-sc0003019-1491911889:750..2731 | Clytia hemisphaerica | exon |
| TCONS_00041784-exon-sc0003019-1510915933:750..2731 | TCONS_00041784-exon-sc0003019-1510915933:750..2731 | Clytia hemisphaerica | exon |
| TCONS_00041784-exon-sc0003019-1575043694:750..2731 | TCONS_00041784-exon-sc0003019-1575043694:750..2731 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003019 | supercontig | sc0003019:750..2731 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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