TCONS_00041780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041780
Unique NameTCONS_00041780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041780 ID=TCONS_00041780|Name=TCONS_00041780|organism=Clytia hemisphaerica|type=transcript|length=356bp
aatttacagaccaacaTTTAACATTGATAATTTACAgaacaaagtcaaaa
tatataaataaatgtTACTAAATGTATTAGACTTAATAAATAATGGCATA
GATACTGAAAAGACACACAAAAGACACTGCAAACAAAAAGAGACTGGAAA
CAAGGGAAAACACGGACCAAAcagaaaaacacagaaaaaactgaaaaacc
taaaaatggggaaaacccCAAACATCCTGAGGAGAACCATAAACAGACAC
TGTGCCTCAGCTGTCGAGAACTATATCTCCAGCTTGTAGATTACGTTTAG
TGTCGTTCCATTTGTGACGTATTTGAAGGTGTTGTACATACTCCTTTCTC
CACCGN
Run BLAST on NCBI

transcript from alignment at sc0003018:4373..4728

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041780 ID=TCONS_00041780|Name=TCONS_00041780|organism=Clytia hemisphaerica|type=transcript|length=356bp|location=Sequence derived from alignment at sc0003018:4373..4728 (Clytia hemisphaerica)
NCGGTGGAGAAAGGAGTATGTACAACACCTTCAAATACGTCACAAATGGA
ACGACACTAAACGTAATCTACAAGCTGGAGATATAGTTCTCGACAGCTGA
GGCACAGTGTCTGTTTATGGTTCTCCTCAGGATGTTTGgggttttcccca
tttttaggtttttcagttttttctgtgtttttctgTTTGGTCCGTGTTTT
CCCTTGTTTCCAGTCTCTTTTTGTTTGCAGTGTCTTTTGTGTGTCTTTTC
AGTATCTATGCCATTATTTATTAAGTCTAATACATTTAGTAacatttatt
tatatattttgactttgttcTGTAAATTATCAATGTTAAAtgttggtctg
taaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025687XLOC_025687Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041780-exon-sc0003018-1491911889:4373..4728TCONS_00041780-exon-sc0003018-1491911889:4373..4728Clytia hemisphaericaexon
TCONS_00041780-exon-sc0003018-1510915933:4373..4728TCONS_00041780-exon-sc0003018-1510915933:4373..4728Clytia hemisphaericaexon
TCONS_00041780-exon-sc0003018-1575043694:4373..4728TCONS_00041780-exon-sc0003018-1575043694:4373..4728Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003018supercontigsc0003018:4373..4728 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.10287	2.82419	1.36632	2.40611	1.62734	0.257189	1.24115	1.45244	0.813507	0	0.244515	0.964407	0.963066	0.333385	0.274087	0.588276	0.724707	0.1857	0	0.805399	1.63342	0	0.553443	1.2579	0.518243	0	0.330932	0.35318	1.87512	1.36461
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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