TCONS_00041779 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041779
Unique NameTCONS_00041779
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length590

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041779 ID=TCONS_00041779|Name=TCONS_00041779|organism=Clytia hemisphaerica|type=transcript|length=590bp
ATTTCCATTGTTCGAATCGTTTCAATTGCTGCTCAGTGAGTGGTTCATCC
CAACCGTGTTTGTTGGCacaaatttcttgtaaaatctTCTTTCCTTCTAA
CAGAAAGGGTGAAATCAAGCCCAACGGATCGTACATTGAGCTGACGGTCG
ACAAGACTCCTCGTCGTGTTGATGGTTTCTCTTTGAATTGAACTTTGTAG
GTGAACACATCACGTTCTGGGCACCACTGCATGCCCAGGGCTCGTTCGTT
GGGTATTGTGTCGGTTGTCATATCAAGGTCCTTCAGAGACTTCGATCTTT
CTTCTGGTGGTATTGATTCGATAACTGAACGACTATTCGAATGAAACTTA
GTGAGACGAAAACCACCTTCTTTGCACATCAGTCGTGTGTTGTTTACTGT
TGAGATGGCTGAGTCTTCTTCCGGANCTTTCTTCTGGTGGTATTGATTCG
ATAACTGAACGATTATTCGAATGAAACTTAATGAGACGAAAACCACCTTC
TTTGCACATCAGTCGTGTGTTGTTTACTGTTGAGATGGCTGAGTCGTCTT
CTGGAAAGGACTTTAGCATGTCGTCTACATAGAAGTTACG
Run BLAST on NCBI

protein sequence of TCONS_00041779-protein

>TCONS_00041779-protein ID=TCONS_00041779-protein|Name=TCONS_00041779-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MCKEGGFRLTKFHSNSRSVIESIPPEERSKSLKDLDMTTDTIPNERALGM
QWCPERDVFTYKVQFKEKPSTRRGVLSTVSSMYDPLGLISPFLLEGKKIL
QEICANKHGWDEPLTEQQLKRFEQWK
Run BLAST on NCBI

transcript from alignment at sc0003018:1339..1928

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041779 ID=TCONS_00041779|Name=TCONS_00041779|organism=Clytia hemisphaerica|type=transcript|length=590bp|location=Sequence derived from alignment at sc0003018:1339..1928 (Clytia hemisphaerica)
CGTAACTTCTATGTAGACGACATGCTAAAGTCCTTTCCAGAAGACGACTC
AGCCATCTCAACAGTAAACAACACACGACTGATGTGCAAAGAAGGTGGTT
TTCGTCTCATTAAGTTTCATTCGAATAATCGTTCAGTTATCGAATCAATA
CCACCAGAAGAAAGNTCCGGAAGAAGACTCAGCCATCTCAACAGTAAACA
ACACACGACTGATGTGCAAAGAAGGTGGTTTTCGTCTCACTAAGTTTCAT
TCGAATAGTCGTTCAGTTATCGAATCAATACCACCAGAAGAAAGATCGAA
GTCTCTGAAGGACCTTGATATGACAACCGACACAATACCCAACGAACGAG
CCCTGGGCATGCAGTGGTGCCCAGAACGTGATGTGTTCACCTACAAAGTT
CAATTCAAAGAGAAACCATCAACACGACGAGGAGTCTTGTCGACCGTCAG
CTCAATGTACGATCCGTTGGGCTTGATTTCACCCTTTCTGTTAGAAGGAA
AGAagattttacaagaaatttgtGCCAACAAACACGGTTGGGATGAACCA
CTCACTGAGCAGCAATTGAAACGATTCGAACAATGGAAAT

Coding sequence (CDS) from alignment at sc0003018:1339..1928

>TCONS_00041779 ID=TCONS_00041779|Name=TCONS_00041779|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0003018:1339..1928 (Clytia hemisphaerica)
ATGTGCAAAGAAGGTGGTTTTCGTCTCACTAAGTTTCATTCGAATAGTCG
TTCAGTTATCGAATCAATACCACCAGAAGAAAGATCGAAGTCTCTGAAGG
ACCTTGATATGACAACCGACACAATACCCAACGAACGAGCCCTGGGCATG
CAGTGGTGCCCAGAACGTGATGTGTTCACCTACAAAGTTCAATTCAAAGA
GAAACCATCAACACGACGAGGAGTCTTGTCGACCGTCAGCTCAATGTACG
ATCCGTTGGGCTTGATTTCACCCTTTCTGTTAGAAGGAAAGAagatttta
caagaaatttgtGCCAACAAACACGGTTGGGATGAACCACTCACTGAGCA
GCAATTGAAACGATTCGAACAATGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025686XLOC_025686Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041779-proteinTCONS_00041779-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041779-exon-sc0003018-1491911889:1339..1928TCONS_00041779-exon-sc0003018-1491911889:1339..1928Clytia hemisphaericaexon
TCONS_00041779-exon-sc0003018-1510915933:1339..1928TCONS_00041779-exon-sc0003018-1510915933:1339..1928Clytia hemisphaericaexon
TCONS_00041779-exon-sc0003018-1575043694:1339..1928TCONS_00041779-exon-sc0003018-1575043694:1339..1928Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003018supercontigsc0003018:1339..1928 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.63595	1.59192	1.12266	0.82357	2.17015	1.8615	2.77751	2.82322	0.881278	0.582183	0.841261	0.620014	0.671717	0.163135	0.246646	0.673869	0.728654	0.684236	0.11228	0.637553	0.397721	0	0.166217	0.825224	0.460207	0.107365	0	0	0.884369	0.650458
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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