TCONS_00041778 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041778
Unique NameTCONS_00041778
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1073

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041778 ID=TCONS_00041778|Name=TCONS_00041778|organism=Clytia hemisphaerica|type=transcript|length=1073bp
GATAATCACGTTGGTCGTCAGGTACTCTGACCTGACAAAACATTGCTTCG
ATATCACCCATAACTGCCACTGNGCTTGCTTTCTAGGTCCCCATCTGGCC
ACCATAAGAAACGAAGATAATCACGTTGGTCGTCAGGTACTCTGACCTGA
TAAAACATTGCTTCGATATCACCCATAACTGCTACTGGCTCCTCTCTGAA
ACGCACGAGGACACCCATCAACTGGTTTGTTAGGTCTGGTCCNGAAGGTT
GATAATATCCGTGCTGTCAAAAGATGAAACCTTAAGGTGATTGATAAACG
AGGTATCTTCTCGATGACTACCAGCCATGGTTTCAATTTCAATAGTGGTC
TTGGTTCCAACGATACCGAGTTGAAATAGGACGTCTTCAGTGACAAAGGT
ACCTTGTGAGCCATTGTCTAACAGTGCAAACGTCTCGATACACTTGGTTG
GATTTGATGGATGAGAGATGATGACTCTGACGATACTCAGACTGACGGAT
TTTGAACTGTTGGAGATGCAATTAGAGATAACTGGTGGAGACGGTTGAGT
TGAGGACGTTGTCTGCGTTGACGTTGATGGTGCGGGTGCNCTTGGTTGGA
TTTGATGGATGAGAGATGATGACTCTGACGATACTCAGACTGACGGATTT
TGAACTGTTGGAGATGCAATTAGAGATAACTGGTGGAGACGGTTGAGTTG
AGGACGTTGTCTGCGTTGACGTTGATGGTGCGGGTGCAGGTGTAGGTGGT
GGATGTTGAGCAGTAATGATAGTCGAAACAGTAGGACTTGCTGATGGTGG
TGTCGTTCGAGTGAATCTGTATTCATGGAGAGTTGTTGGATGTGACTTGC
TGCAAACAGCACAGGTTCGCTTGTTCTTACAACTTTTGGCATTGTGCGAA
GAATCAGTTGGTTTCAAACAGCAGAAGCATAAACGTTTGCGGAAAATGAA
CCTCATGCGGTCAGCTAGATCCATCTTGTTGTAGTCTTGACATTTCTCCA
AATCATGCGGTGTTTTGTAATTACAACAAATGCATTTATCCATTGAGATG
AGGTTACTTCTGAATCTTTGTCG
Run BLAST on NCBI

protein sequence of TCONS_00041778-protein

>TCONS_00041778-protein ID=TCONS_00041778-protein|Name=TCONS_00041778-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
RQRFRSNLISMDKCICCNYKTPHDLEKCQDYNKMDLADRMRFIFRKRLCF
CCLKPTDSSHNAKSCKNKRTCAVCSKSHPTTLHEYRFTRTTPPSASPTVS
TIITAQHPPPTPAPAPSTSTQTTSSTQPSPPVISNCISNSSKSVSLSIVR
VIISHPSNPTKXTRTINVNADNVLNSTVSTSYL
Run BLAST on NCBI

transcript from alignment at sc0003018:93..1165

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041778 ID=TCONS_00041778|Name=TCONS_00041778|organism=Clytia hemisphaerica|type=transcript|length=1073bp|location=Sequence derived from alignment at sc0003018:93..1165 (Clytia hemisphaerica)
CGACAAAGATTCAGAAGTAACCTCATCTCAATGGATAAATGCATTTGTTG
TAATTACAAAACACCGCATGATTTGGAGAAATGTCAAGACTACAACAAGA
TGGATCTAGCTGACCGCATGAGGTTCATTTTCCGCAAACGTTTATGCTTC
TGCTGTTTGAAACCAACTGATTCTTCGCACAATGCCAAAAGTTGTAAGAA
CAAGCGAACCTGTGCTGTTTGCAGCAAGTCACATCCAACAACTCTCCATG
AATACAGATTCACTCGAACGACACCACCATCAGCAAGTCCTACTGTTTCG
ACTATCATTACTGCTCAACATCCACCACCTACACCTGCACCCGCACCATC
AACGTCAACGCAGACAACGTCCTCAACTCAACCGTCTCCACCAGTTATCT
CTAATTGCATCTCCAACAGTTCAAAATCCGTCAGTCTGAGTATCGTCAGA
GTCATCATCTCTCATCCATCAAATCCAACCAAGNGCACCCGCACCATCAA
CGTCAACGCAGACAACGTCCTCAACTCAACCGTCTCCACCAGTTATCTCT
AATTGCATCTCCAACAGTTCAAAATCCGTCAGTCTGAGTATCGTCAGAGT
CATCATCTCTCATCCATCAAATCCAACCAAGTGTATCGAGACGTTTGCAC
TGTTAGACAATGGCTCACAAGGTACCTTTGTCACTGAAGACGTCCTATTT
CAACTCGGTATCGTTGGAACCAAGACCACTATTGAAATTGAAACCATGGC
TGGTAGTCATCGAGAAGATACCTCGTTTATCAATCACCTTAAGGTTTCAT
CTTTTGACAGCACGGATATTATCAACCTTCNGGACCAGACCTAACAAACC
AGTTGATGGGTGTCCTCGTGCGTTTCAGAGAGGAGCCAGTAGCAGTTATG
GGTGATATCGAAGCAATGTTTTATCAGGTCAGAGTACCTGACGACCAACG
TGATTATCTTCGTTTCTTATGGTGGCCAGATGGGGACCTAGAAAGCAAGC
NCAGTGGCAGTTATGGGTGATATCGAAGCAATGTTTTGTCAGGTCAGAGT
ACCTGACGACCAACGTGATTATC

Coding sequence (CDS) from alignment at sc0003018:93..1165

>TCONS_00041778 ID=TCONS_00041778|Name=TCONS_00041778|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at sc0003018:93..1165 (Clytia hemisphaerica)
CGACAAAGATTCAGAAGTAACCTCATCTCAATGGATAAATGCATTTGTTG
TAATTACAAAACACCGCATGATTTGGAGAAATGTCAAGACTACAACAAGA
TGGATCTAGCTGACCGCATGAGGTTCATTTTCCGCAAACGTTTATGCTTC
TGCTGTTTGAAACCAACTGATTCTTCGCACAATGCCAAAAGTTGTAAGAA
CAAGCGAACCTGTGCTGTTTGCAGCAAGTCACATCCAACAACTCTCCATG
AATACAGATTCACTCGAACGACACCACCATCAGCAAGTCCTACTGTTTCG
ACTATCATTACTGCTCAACATCCACCACCTACACCTGCACCCGCACCATC
AACGTCAACGCAGACAACGTCCTCAACTCAACCGTCTCCACCAGTTATCT
CTAATTGCATCTCCAACAGTTCAAAATCCGTCAGTCTGAGTATCGTCAGA
GTCATCATCTCTCATCCATCAAATCCAACCAAGNGCACCCGCACCATCAA
CGTCAACGCAGACAACGTCCTCAACTCAACCGTCTCCACCAGTTATCTCT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025685XLOC_025685Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041778-exon-sc0003018-1491911889:93..1165TCONS_00041778-exon-sc0003018-1491911889:93..1165Clytia hemisphaericaexon
TCONS_00041778-exon-sc0003018-1510915933:93..1165TCONS_00041778-exon-sc0003018-1510915933:93..1165Clytia hemisphaericaexon
TCONS_00041778-exon-sc0003018-1575043694:93..1165TCONS_00041778-exon-sc0003018-1575043694:93..1165Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041778-proteinTCONS_00041778-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003018supercontigsc0003018:93..1165 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.62979	1.71045	0.981829	0.908161	1.59995	1.13755	2.21236	2.45719	0.433036	0.678034	0.878715	0.423551	0.303199	0.527478	0.280063	0.463818	0.291754	0.210285	0.0549117	0.182706	0.298056	0.688672	0.13039	0.363274	0.0990399	0.171346	0.0563044	0	0.873731	0.429371
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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