TCONS_00041777 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041777
Unique NameTCONS_00041777
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041777 ID=TCONS_00041777|Name=TCONS_00041777|organism=Clytia hemisphaerica|type=transcript|length=333bp
AGTGAAAGGAAAAAATGAGTTTTCATAAACTTTAAGTTTTGCATGGATCA
AGTTATATCTTACATTAGAAGTCCTTTGTCTTGTTGGTAGTAAAGGCTTC
TCCATGTATTTAAAGCCATTTACGCaatcaaataacattttcaaacaaga
taaaTCTCTTCGCATTTCAAGAGACTCGAGATTCAATCGTTTAGCCATTG
CTGTTGGGCTGTAATGGTATGCCAATTTGTTCTCAATCCATCTACAAGCT
TTGCGCTGGACCATTTCGATCTTGCTAGATAACGTTGTGTTGTTATGAGG
GCACCAGACAGGGCTAGCATATTCGAGAATTNN
Run BLAST on NCBI

protein sequence of TCONS_00041777-protein

>TCONS_00041777-protein ID=TCONS_00041777-protein|Name=TCONS_00041777-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
XILEYASPVWCPHNNTTLSSKIEMVQRKACRWIENKLAYHYSPTAMAKRL
NLESLEMRRDLSCLKMLFDCVNGFKYMEKPLLPTRQRTSNVRYNLIHAKL
KVYENSFFPFT
Run BLAST on NCBI

transcript from alignment at sc0003015:13152..13484

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041777 ID=TCONS_00041777|Name=TCONS_00041777|organism=Clytia hemisphaerica|type=transcript|length=333bp|location=Sequence derived from alignment at sc0003015:13152..13484 (Clytia hemisphaerica)
NNAATTCTCGAATATGCTAGCCCTGTCTGGTGCCCTCATAACAACACAAC
GTTATCTAGCAAGATCGAAATGGTCCAGCGCAAAGCTTGTAGATGGATTG
AGAACAAATTGGCATACCATTACAGCCCAACAGCAATGGCTAAACGATTG
AATCTCGAGTCTCTTGAAATGCGAAGAGAtttatcttgtttgaaaatgtt
atttgattGCGTAAATGGCTTTAAATACATGGAGAAGCCTTTACTACCAA
CAAGACAAAGGACTTCTAATGTAAGATATAACTTGATCCATGCAAAACTT
AAAGTTTATGAAAACTCATTTTTTCCTTTCACT

Coding sequence (CDS) from alignment at sc0003015:13152..13484

>TCONS_00041777 ID=TCONS_00041777|Name=TCONS_00041777|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0003015:13152..13484 (Clytia hemisphaerica)
NNAATTCTCGAATATGCTAGCCCTGTCTGGTGCCCTCATAACAACACAAC
GTTATCTAGCAAGATCGAAATGGTCCAGCGCAAAGCTTGTAGATGGATTG
AGAACAAATTGGCATACCATTACAGCCCAACAGCAATGGCTAAACGATTG
AATCTCGAGTCTCTTGAAATGCGAAGAGAtttatcttgtttgaaaatgtt
atttgattGCGTAAATGGCTTTAAATACATGGAGAAGCCTTTACTACCAA
CAAGACAAAGGACTTCTAATGTAAGATATAACTTGATCCATGCAAAACTT
AAAGTTTATGAAAACTCATTTTTTCCTTTCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025684XLOC_025684Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041777-exon-sc0003015-1491911889:13152..13484TCONS_00041777-exon-sc0003015-1491911889:13152..13484Clytia hemisphaericaexon
TCONS_00041777-exon-sc0003015-1510915933:13152..13484TCONS_00041777-exon-sc0003015-1510915933:13152..13484Clytia hemisphaericaexon
TCONS_00041777-exon-sc0003015-1575043694:13152..13484TCONS_00041777-exon-sc0003015-1575043694:13152..13484Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041777-proteinTCONS_00041777-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003015supercontigsc0003015:13152..13484 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.09133	2.30488	4.10521	1.08344	0.771657	0.654967	0.367833	0	1.5928	1.16956	2.2739	1.59714	1.27893	0.546135	1.14742	1.18756	1.7883	1.49958	1.88302	2.08185	2.11613	1.45828	1.68898	1.27631	0	0.822448	1.97535	0.555878	2.27651	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041777 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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