TCONS_00041771 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041771
Unique NameTCONS_00041771
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041771 ID=TCONS_00041771|Name=TCONS_00041771|organism=Clytia hemisphaerica|type=transcript|length=571bp
CGGCACATTCGTCTGCGTAGTTCCTTTTCAAAGTTGTAGACGTTTTAAAA
ATAGGAGAATATGGATGAAATTCTGGCTTTTTTGAAAGGAAAGTTGAAAT
ACCTTCCAATTGGGCCACTGGAAAAGTTTCTTCCTAAAGAACACCTTGGA
AGGCACTCCAAAGAGTACCTGGTCGACAACTACGATGATTTAAGGATGAT
TAAATTGCAAGCCTCAAACATGGGGACCCATTGTCCTCCTCTTACAGTTC
AACCTTTTACAACGCAGGAGTCACATGATATTTGGAACAGGAAAGGTGCT
GGCCTGGTCAATGTAGGGATCACAGAAGTACCAGTCGTGGTACAGAATGT
GATCCTAGATTATATGGAGGAAGATGTCCAAGAATATGAGCTCATTCTTT
AAATCATATGATCCAGCAAACCAGCTAACCAGTGAACCGGATGAACAACA
CGATGTTACAAACCTGTTAGCTTTGATAAGTGACCTGGGTGGTGGCAGCA
TACCAATGGATCAGAATATATTGAGACCAGCCAACAGGATCACACAAAGC
ATTAACGAAATATCGCACAGT
Run BLAST on NCBI

transcript from alignment at sc0003014:6416..13730+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041771 ID=TCONS_00041771|Name=TCONS_00041771|organism=Clytia hemisphaerica|type=transcript|length=7315bp|location=Sequence derived from alignment at sc0003014:6416..13730+ (Clytia hemisphaerica)
CGGCACATTCGTCTGCGTAGTTCCTTTTCAAAGTTGTAGACGTTTTAAAA
ATAGGAGAATATGGATGAAATTCTGGCTTTTTTGAAAGGAAAGGTTAGTG
TTAACACATTTCACACAAGCTAATATCTTCAATTACAGTATTCAGTTTGT
GTCTTTGTCCAAATCTTTccttctttaaaaagaaaataactgTCTGCTCC
CCCTCCCTTCTGTCAGTCTGTCCAGTAGTCAGTCTGGTGTGTGTGCCCTT
GCCCTTCTAagccatatttttttatatgttcaTATCTTCTGTATcttcaa
ttaaaaatttaaaacacccccttcCTAATGTTGGAAGAATGTAAAGCGTT
ATTGATATTTTGGAATTCTATTCTATGATTTTTTCATAGATTATTGGTTA
GTGTAATCATAATGCAATTCTGCCATTATTCATTTTGAATAGAATTCCAC
AATGTCATTATCActtaacattttttaataaatccTATCCATTATTTTGG
ctgttgacaacattagggctACTTACTGTAATCGATTCGACGATAATGCA
ATTCTGCCATTATTCGTTTTGAATAGAATTCCACAATGTCATTATCActt
aacattttttaataaattctATCCAATATTTTGGctgttgacaacattag
ggctACTTACTGTAATCGATTCAACGATCGAAACACCATCATACTGTCTG
TTGGTTTTGTTCGGTGTCAAAAGTTATTCCTCTGCTTTGGCCCTCAACAA
ACATTTTTGTGTCTGGTGTGTGTCCGGTGTGAGAGATTTTGGAACTTTTA
TACACCAGACACTTCTGTTTCTATAAAATAATACCCACCGGACTTTGTCC
AATGGTGTCCGGTGTagtgattgtccggtggtaaaaagtaTTCAcaacta
aaaaaacaaaaagcatCAAAGAAATTTGatccataatggtggaatcAGGT
GGAATTGCTGATTTcagtcaatttttcttttatcttgGTGGTCCAGTTTC
AAATGAATTTTGGGAAACAGCGGCACTAAGCTATTTTGACAGTTTTAATG
CACCTGGAAATATAGCCTTTCTAATTTCGTTTCAGAAAAAATCCCaggaa
cattttttttttatatttctggcaattttggctatttactttcCGCTTTG
TCGGTATTTTGACAGAATTCCCCTAGTAACGCCTTAGTTACGGGGTATAA
GAGCCTACTGAAAGCCTTTTCCAGTTGGCTATAAGCCGGATTGAAGCCTT
AAATAAAATTCTGAGCAATTTGGAAAATGTATAATCATCACATAGGCCAT
ATAGTTAAGGAGTTTCCCTCATTTCAGTCAATTTGGACTGGTTTACCCTA
GCAACGCCTTAGTTACGAGGTATTTGAGTCTATTGGGAGCCGTTTTAACT
TGGTTTTGAGCTGAATTGAATCATAAAATGAGACTCTGAGCAACNGGGAT
TTTCAATATGTGCTTAATTGAggctatttcaaaaaatgataaaattagcC
TCAAAACtacacattttgataaaaaagaaattccagTGAATTTCTAGAGT
CCTAATCCTCAATCTTGTATTTTCCCCTCTCTCATGAAACATTTGCTAAG
AAGTTACAAGGCATTatccaaaatcaacaaaaattgcttttttccAATGT
GTCANTTACAGGGTATATATAAAGCTTATCAATTTCCTTCACCAACATAA
TTTTTGAGCAAGTTTGAAgttgaatttgatgttttgaaCAATCTTAATGT
GTTTTGTCatcaaaaaacattaaaaataagGACCTAAAGTATAATAGAAT
TAACGTATAATAAATAGTAGAAAAGTCAGCACAATGAGGAGATTAAGTAT
TGGTTGAAATCAGCAATTCTGCCATTATGgacataatttttttgatgttt
ttttttgtttttttagttgCCTCATTGTGAGGACCTATCACTGTGTCAAA
TATGGTGTAATTTCTATGATGCTAATGAGGAGATATTAAGGATTTAAAAA
TTTGTGTATTTAACAGCCCATAACTGCTAAACTTTGGCTGTGAATTTTTC
TTACCAAACCtagtctggagaccatactctgttacaaaaatatttctatc
ctgttaaaatcccaacaacttcaNGCCTATGATATatgtaaaaataagaa
aaattcaagaCCCCCATGATTAAACTTTTGCCTTCTCAGGGTCTCTCCTA
TATGCAATTGCTCTTAAGTGCTTTTAAATCCCATTCAAAACAACTCATTC
ATTTTTAGTTGAAATACCTTCCAATTGGGCCACTGGAAAAGTTTCTTCCT
AAAGAACACCTTGGAAGGCACTCCAAAGAGTACCTGGTCGACAACTACGA
TGATTTAAGGATGATTAAATTGCAAGCCTCAAACATGGGGACCCATTGTC
CTCCTCTTACAGTTCAACCTTTTACAACGCAGGAGTCACATGGTAATGAA
TCGTCTGAATTTTTGTTCTGTATTTTTCTTGCTCACTTTAGGCAGTAGTC
TCATGATTTCAATTGCCTCTATTTGATCAATCCCGAAAAGTAACTGGTTG
GCTCAGTGCCTAGTCAAAAAGTTCACACAAATCTTTTACATACAATCATT
TAATCGTTTACATACAAATCTCTATTCATTTTTAAGAATAACGATGCCTC
TGAATAGCTAATGTGTAGCCCAAACCATCCCTTTGTCCACTTTTTCGGTA
CTTTACCTTACAGATATTTGGAACAGGAAAGGTGCTGGCCTGGTCAATGT
AGGGATCACAGAAGTACCAGTCGTGGTACAGAATGTGATCCTAGATTATA
TGGAGGAAGATGTCCAAGAATATGAGGTAAGAAATGTTGCCAACTGTCTT
TTCTAATTACTTATAAGTGGATGCAGGATAGGATTTCTGGAAACTGAAAC
ACCGGAATAAAATAGGCCGTTAACTgaaaaaccaaagaaatataGGATCA
ACACAGTGATACTGAATTTCCATACACCCCCCCCACTTATGAGTTAAAAA
AGCTTTTTACCATACCATTTTGAGTTGCTAAAACGGTTGGTGTAATTATT
cttgcatttttaaaggttagcGTAGATAGATAATTCAGCTGTTTTCTGTT
GAGGGGTTATTGTGGTTTCTTCTGGAAATAGAGTAAAATTTTTGGAATAG
GTAGAATTTTATctccttgttttttatttgtttggcTTAGATTAAATGAT
TAGATTTCGAAACTTCTCAAACTTCCCACAGTCGTTGTCTTGCAGCTTTT
ATTATATATAGAATCTTTATTTCAGCCTAATTATTATGAATTTTTGGATG
AACAGAGAGAAGCAGAAGAAGAAAGAACAACAGGGGAAGAATGTGAAGGC
ACTATGAACTTTGAGATGAACATGTTAGTACAGATTGTATTGTGCTAGTC
TGTAGTCAACCCTAGACTTGTATATTATGTGCTTGAATTTAGTAGTCTAT
TTGTAGTAGCCTAAATTGAGAGTCACACTTGTTTAAATTTTACAGTGTTT
TAAGTTATCTATTCTACTTGCACAAAATTATATGCTAagcattttttctt
ttaaaggtGTACTGCAGCTGATGGAAATTTTCTTAAAGATGATTTGAGGT
TAGGCTAATTTAGGCACAAAATAAGGATTGCTATTATACANCGTTAACTg
aaaaaccaaagaaatataGGATCAACACAGTGATACTGAATTTCCATACA
CCCCCCCCACTTATGAGTTAAAAAAGCTTTTTACCATACCATTTTGAGTT
GCTAAAACGGTTGGTGTAATTATTcttgcatttttaaaggttagcGTAGA
TAGATAATTCAGCTGTTTTCTGTTGAGGGGTTATTGTGGTTTCTTCTGGA
AATAGAGTAAAATTTTTGGAATAGGTAGAATTTTATctccttgtttttta
tttgtttggcTTAGATTAAATGATTAGATTTCGAAACTTCTCAAACTTCC
CACAGTCGTTGTCTTGCAGCTTTTATTATATATAGAATCTTTATTTCAGC
CTAATTATTATGAATTTTTGGATGAACAGAGAGAAGCAGAAGAAGAAAGA
ACAACAGGGGAAGAATGTGAAGGCACTATGAACTTTGAGATGAACATGTT
AGTACAGATTGTATTGTGCTAGTCTGTAGTCAACCCTAGACTTGTATATT
ATGTGCTTGAATTTAGTAGTCTATTTGTAGTAGCCTAAATTGAGAGTCAC
ACTTGTTTAAATTTTACAGTGTTTTAAGTTATCTATTCTACTTGCACAAA
ATTATATGCTAagcattttttcttttaaaggtGTACTGCAGCTGATGGAA
ATTTTCTTAAAGATGATTTGAGGTTAGGCTAATTTAGGCACAAAATAAGG
ATTGCTATTATACAATCTTaggaaattttattgaaagatGTCATTAGAAT
AAGATTTACAGTGTATATTAAATAATCCATGCAGAATAGGGATTGGTTAC
ACATCTAGGTAAAGTGGAATTAGAGACCAAAGTGAAATATTGATCCTGTT
ATACTTNTACACATCTAGGTAAAGTGGAATTGGAGACCAAAGTGAAATAT
TGATCCTGTTATACTTTTGACTTCACCTAAAAAGTTTTGCAGCTGCTGGG
TCCTAATTAGCCTGAGGCTAATTCTAATTagctgatattttttggaaaag
aatttGTAAAAATCATGAACTGCTTCACATGTCTATGCACAGGTATACAA
CAAGTAGGGTTGTGTATTTTAACCAAAGTTCACTTTACTTCACTTCTGCT
TACCATACGTCCTCTTATTCAAAATGGGAAATAATTAAAGAATTTTGGTA
AAATGACTCACTAAAGCCTTAGCATTTTGATTTTCTGTCCAGATTCACCA
CATTTTATATTCTGAACCTTTACGTACTTTATTGCATGAAAATTTTGTGG
TCNGGGAAATAATTAAAGAATTTTGGTAAAATGACTCACTAAAGCCTTAG
CATTTTGATTTTCTGTCCAGATTCACCACATTTTATATTCTGAACCTTTA
CGTACTTTATTGCATGAAAATTTTGCGGTCATTTTAATTTTGCGGTCCAA
GAGAAACGTGTATTTTGCGGCATTTTGGTTTCGTAGGCCGATTTGTACTT
AAAAGACTagaaaaatacacaatttttatatattttagatACGTAGtcaa
aaaaacagattttttatGCTGACCATAAAATCGTTTTTCGCGGCATTTTA
ATTTCACAGTTTTTCTACCTCGACCACGAAACTGCAAAACTTTCATGCAA
CAAAGTAGTCCTCAGAatctgaaacatttttttcattaatgAAACCTCTT
ATTTTCTATTTCTCATAGCTCATTCTTTAAATCATATGATCCAGCAAACC
AGCTAACCAGTGAACCGGATGAACAACACGATGGGTAATTGTTTTATAGA
TTCTGTTTTTGAATATCTTCAGTATACATCTAAACCTTTACATACTTTAT
TGCATGAAAATTTTGCGGTCATTTTAATTTTGTGGTCCAAGAGAAAAGTG
TATTTTGCGGCATTTTGATTTCGTGGTTCCGAAGCAGTAAAAGGTGAAAA
TAGGCCGATTTGTACTTAAAAGACTAGAAAAATACAcaacttttatatat
tttaGATACGTAGTcgaaaaaacagattttttatGCTGACCATAAAATCG
TTTTTCGCGGCATTTTAATTTCACAGTTTTTCTACCTCAACCACGAAACC
GCGAAACTTTCATGCAATAAAGTAGTCCTCAGAatctgaaacattttttt
cattaatgAAAACTCTTATTTTCTATTTCTCATAGCTCATTCTTTAAATC
ATATGATCCAGCAAACCAGCTAACCAGTGAACCGGATGAACAACACGATG
TGTAATTGTTTTATAGATTCTGTTTTTGAATATCTTAAGTATACATCTTA
TTGCTGcgtgtattttaatttttatttcttgatttctttaatttaaaagt
tcaaataaATCTATAATATATTTTCCATCTTTCAACCCTTGTATTTAGCT
GAGAAAAAATCTCAGAAACTGAAAGCCTCCACACAGGACTTTTTTATTCC
CACCCGATTctaatttgtttttgaaaatatttccatcCCCAAGACTTTTA
GAGACAGAAAAGTAGATTCATTTAAATGTAGCTTTTCACATctttcaaaa
tcgaaaaaaaattaccatgGTGGTGGGTAACATTCAATTTGTTTCCAAGT
GTTCAATAAGCTATCGATTAACATATATCTACAGAACATTTAACACAAGA
ATGtccttgaaaatttcaacaCAGTGTCAAAAAATTCCGTTGAAagcatt
tttattcaattttggtctttatttgtcctatttttcaactaaaaaaaatt
gtcctaTTTACTTAACTTGTAAGTACAAAAGTTGACTGGGAGCGGAGATC
CAAtgagaatttttcttttccaaatgTTGATCTAACTGTAGGGGAAGTAC
CTATCCACCTTttaaaccaaccttttcaattGAGTACAGAGATGCCTTTT
catggttttgtttttgtttatttataaaaattaaatttgtgttttgaatt
ttcTAGTACAAACCTGTTAGCTTTGATAAGTGACCTGGGTGGTGGCAGCA
TACCAATGGATCAGAATATATTGAGACCAGCCAACAGGTTAGATGCTCAT
ATTTTAAGTTAAAGAATTAGCTTAAAGGGCTGGTAGATATTCTTATTTAC
TACTTTTTGTGAGATGTGGAAAAAAACTATACAACTTTTCCTAAAAGTTT
TTTGTCCTATTTTTCAGCAATTCTCAGTTGGAATTTAGCTTAACAGCACT
TTTCAAATCTTAAACCTTCTTGCATCTAGGGTGGGTCAAACCCCTCCaca
aaactgaaatttttttgtccAATCGACTTGAAAATTTGCTAGTGTACACC
aaatctaacttttttttttaaactttaatctCTTTGCCCCCAATTTTGCA
TGTGGCGGCCATCaaaagaattattgattttCGGAACttgaggtcctata
aattaaccgttgcccgtttgtttgtttgttcgttcgtttgtttgttcgtt
tatgagcttttcttatgagataaatgttttttgccaatgaaattgtttct
ttacagaaaccAACCTTTTATCTTTACAGAAGATTTGAGTTtaggtttga
aattttgagttgCTAAAATGTTTGCTCATAAATATGGAACTGGGCCAAAT
TCTATATATATCTATAAGCAcattggaaaaaaacatttaactGGCCTGAA
AAGCTTtaattcattcaatttttttatacagGATCACACAAAGCATTAAC
GAAATATCGCACAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025680XLOC_025680Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041771-exon-sc0003014-1491911889:6416..6508TCONS_00041771-exon-sc0003014-1491911889:6416..6508Clytia hemisphaericaexon
TCONS_00041771-exon-sc0003014-1510915933:6416..6508TCONS_00041771-exon-sc0003014-1510915933:6416..6508Clytia hemisphaericaexon
TCONS_00041771-exon-sc0003014-1575043694:6416..6508TCONS_00041771-exon-sc0003014-1575043694:6416..6508Clytia hemisphaericaexon
TCONS_00041771-exon-sc0003014-1491911889:8674..8857TCONS_00041771-exon-sc0003014-1491911889:8674..8857Clytia hemisphaericaexon
TCONS_00041771-exon-sc0003014-1510915933:8674..8857TCONS_00041771-exon-sc0003014-1510915933:8674..8857Clytia hemisphaericaexon
TCONS_00041771-exon-sc0003014-1575043694:8674..8857TCONS_00041771-exon-sc0003014-1575043694:8674..8857Clytia hemisphaericaexon
TCONS_00041771-exon-sc0003014-1491911889:9129..9241TCONS_00041771-exon-sc0003014-1491911889:9129..9241Clytia hemisphaericaexon
TCONS_00041771-exon-sc0003014-1510915933:9129..9241TCONS_00041771-exon-sc0003014-1510915933:9129..9241Clytia hemisphaericaexon
TCONS_00041771-exon-sc0003014-1575043694:9129..9241TCONS_00041771-exon-sc0003014-1575043694:9129..9241Clytia hemisphaericaexon
TCONS_00041771-exon-sc0003014-1491911889:12201..12266TCONS_00041771-exon-sc0003014-1491911889:12201..12266Clytia hemisphaericaexon
TCONS_00041771-exon-sc0003014-1510915933:12201..12266TCONS_00041771-exon-sc0003014-1510915933:12201..12266Clytia hemisphaericaexon
TCONS_00041771-exon-sc0003014-1575043694:12201..12266TCONS_00041771-exon-sc0003014-1575043694:12201..12266Clytia hemisphaericaexon
TCONS_00041771-exon-sc0003014-1491911889:12972..13052TCONS_00041771-exon-sc0003014-1491911889:12972..13052Clytia hemisphaericaexon
TCONS_00041771-exon-sc0003014-1510915933:12972..13052TCONS_00041771-exon-sc0003014-1510915933:12972..13052Clytia hemisphaericaexon
TCONS_00041771-exon-sc0003014-1575043694:12972..13052TCONS_00041771-exon-sc0003014-1575043694:12972..13052Clytia hemisphaericaexon
TCONS_00041771-exon-sc0003014-1491911889:13697..13730TCONS_00041771-exon-sc0003014-1491911889:13697..13730Clytia hemisphaericaexon
TCONS_00041771-exon-sc0003014-1510915933:13697..13730TCONS_00041771-exon-sc0003014-1510915933:13697..13730Clytia hemisphaericaexon
TCONS_00041771-exon-sc0003014-1575043694:13697..13730TCONS_00041771-exon-sc0003014-1575043694:13697..13730Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003014supercontigsc0003014:6416..13730 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.12643e-09	0	0.0706889	0	0	0	0	0.63292	2.62989	0.00061762	5.10238	0	0	0.000113129	0.0466005	0	4.47692e-09	2.90533	0.00726078	3.34273	0	2.53039	2.17846	0	0	0	0	6.21955	1.57231	4.58328
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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