TCONS_00041768 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041768
Unique NameTCONS_00041768
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length841

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041768 ID=TCONS_00041768|Name=TCONS_00041768|organism=Clytia hemisphaerica|type=transcript|length=841bp
CTCGATGAAAACATTGTAGCGGCACATTCGTCTGCGTAGTTCCTTTTCAA
AGTTGTAGACGTTTTAAAAATAGGAGAATATGGATGAAATTCTGGCTTTT
TTGAAAGGAAAGTTGAAATACCTTCCAATTGGGCCACTGGAAAAGTTTCT
TCCTAAAGAACACCTTGGAAGGCACTCCAAAGAGTACCTGGTCGACAACT
ACGATGATTTAAGGATGATTAAATTGCAAGCCTCAAACATGGGGACCCAT
TGTCCTCCTCTTACAGTTCAACCTTTTACAACGCAGGAGTCACATGATAT
TTGGAACAGGAAAGGTGCTGGCCTGGTCAATGTAGGGATCACAGAAGTAC
CAGTCGTGGTACAGAATGTGATCCTAGATTATATGGAGGAAGATGTCCAA
GAATATGAGCTCATTCTTTAAATCATATGATCCAGCAAACCAGCTAACCA
GTGAACCGGATGAACAACACGATGGCTCATTCTTTAAATCATATGATCCA
GCAAACCAGCTAACCAGTGAACCGGATGAACAACACGATGTTACAAACCT
GTTAGCTTTGATAAGTGACCTGGGTGGTGGCAGCATACCAATGGATCAGA
ATATATTGAGACCAGCCAACAGGATCACACAAAGCATTAACGAAATATCG
CACAGTGAACAGACGTTACCCAGTACTATAAAAGCACCCGTTTGCAAAAA
AGCACCCAGTTGCAAAAAAGCAACCAGTAGCAGTACTAAAGAAACTTATG
GCAAAATGGTGAGAAGTTTTACTTTAATATTCTAATCGATATAGTATTTG
TAACTAAATGGACTTGGTTTccttttcaatcatttttatat
Run BLAST on NCBI

transcript from alignment at sc0003014:6397..14028+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041768 ID=TCONS_00041768|Name=TCONS_00041768|organism=Clytia hemisphaerica|type=transcript|length=7632bp|location=Sequence derived from alignment at sc0003014:6397..14028+ (Clytia hemisphaerica)
CTCGATGAAAACATTGTAGCGGCACATTCGTCTGCGTAGTTCCTTTTCAA
AGTTGTAGACGTTTTAAAAATAGGAGAATATGGATGAAATTCTGGCTTTT
TTGAAAGGAAAGGTTAGTGTTAACACATTTCACACAAGCTAATATCTTCA
ATTACAGTATTCAGTTTGTGTCTTTGTCCAAATCTTTccttctttaaaaa
gaaaataactgTCTGCTCCCCCTCCCTTCTGTCAGTCTGTCCAGTAGTCA
GTCTGGTGTGTGTGCCCTTGCCCTTCTAagccatatttttttatatgttc
aTATCTTCTGTATcttcaattaaaaatttaaaacacccccttcCTAATGT
TGGAAGAATGTAAAGCGTTATTGATATTTTGGAATTCTATTCTATGATTT
TTTCATAGATTATTGGTTAGTGTAATCATAATGCAATTCTGCCATTATTC
ATTTTGAATAGAATTCCACAATGTCATTATCActtaacattttttaataa
atccTATCCATTATTTTGGctgttgacaacattagggctACTTACTGTAA
TCGATTCGACGATAATGCAATTCTGCCATTATTCGTTTTGAATAGAATTC
CACAATGTCATTATCActtaacattttttaataaattctATCCAATATTT
TGGctgttgacaacattagggctACTTACTGTAATCGATTCAACGATCGA
AACACCATCATACTGTCTGTTGGTTTTGTTCGGTGTCAAAAGTTATTCCT
CTGCTTTGGCCCTCAACAAACATTTTTGTGTCTGGTGTGTGTCCGGTGTG
AGAGATTTTGGAACTTTTATACACCAGACACTTCTGTTTCTATAAAATAA
TACCCACCGGACTTTGTCCAATGGTGTCCGGTGTagtgattgtccggtgg
taaaaagtaTTCAcaactaaaaaaacaaaaagcatCAAAGAAATTTGatc
cataatggtggaatcAGGTGGAATTGCTGATTTcagtcaatttttctttt
atcttgGTGGTCCAGTTTCAAATGAATTTTGGGAAACAGCGGCACTAAGC
TATTTTGACAGTTTTAATGCACCTGGAAATATAGCCTTTCTAATTTCGTT
TCAGAAAAAATCCCaggaacattttttttttatatttctggcaattttgg
ctatttactttcCGCTTTGTCGGTATTTTGACAGAATTCCCCTAGTAACG
CCTTAGTTACGGGGTATAAGAGCCTACTGAAAGCCTTTTCCAGTTGGCTA
TAAGCCGGATTGAAGCCTTAAATAAAATTCTGAGCAATTTGGAAAATGTA
TAATCATCACATAGGCCATATAGTTAAGGAGTTTCCCTCATTTCAGTCAA
TTTGGACTGGTTTACCCTAGCAACGCCTTAGTTACGAGGTATTTGAGTCT
ATTGGGAGCCGTTTTAACTTGGTTTTGAGCTGAATTGAATCATAAAATGA
GACTCTGAGCAACNGGGATTTTCAATATGTGCTTAATTGAggctatttca
aaaaatgataaaattagcCTCAAAACtacacattttgataaaaaagaaat
tccagTGAATTTCTAGAGTCCTAATCCTCAATCTTGTATTTTCCCCTCTC
TCATGAAACATTTGCTAAGAAGTTACAAGGCATTatccaaaatcaacaaa
aattgcttttttccAATGTGTCANTTACAGGGTATATATAAAGCTTATCA
ATTTCCTTCACCAACATAATTTTTGAGCAAGTTTGAAgttgaatttgatg
ttttgaaCAATCTTAATGTGTTTTGTCatcaaaaaacattaaaaataagG
ACCTAAAGTATAATAGAATTAACGTATAATAAATAGTAGAAAAGTCAGCA
CAATGAGGAGATTAAGTATTGGTTGAAATCAGCAATTCTGCCATTATGga
cataatttttttgatgtttttttttgtttttttagttgCCTCATTGTGAG
GACCTATCACTGTGTCAAATATGGTGTAATTTCTATGATGCTAATGAGGA
GATATTAAGGATTTAAAAATTTGTGTATTTAACAGCCCATAACTGCTAAA
CTTTGGCTGTGAATTTTTCTTACCAAACCtagtctggagaccatactctg
ttacaaaaatatttctatcctgttaaaatcccaacaacttcaNGCCTATG
ATATatgtaaaaataagaaaaattcaagaCCCCCATGATTAAACTTTTGC
CTTCTCAGGGTCTCTCCTATATGCAATTGCTCTTAAGTGCTTTTAAATCC
CATTCAAAACAACTCATTCATTTTTAGTTGAAATACCTTCCAATTGGGCC
ACTGGAAAAGTTTCTTCCTAAAGAACACCTTGGAAGGCACTCCAAAGAGT
ACCTGGTCGACAACTACGATGATTTAAGGATGATTAAATTGCAAGCCTCA
AACATGGGGACCCATTGTCCTCCTCTTACAGTTCAACCTTTTACAACGCA
GGAGTCACATGGTAATGAATCGTCTGAATTTTTGTTCTGTATTTTTCTTG
CTCACTTTAGGCAGTAGTCTCATGATTTCAATTGCCTCTATTTGATCAAT
CCCGAAAAGTAACTGGTTGGCTCAGTGCCTAGTCAAAAAGTTCACACAAA
TCTTTTACATACAATCATTTAATCGTTTACATACAAATCTCTATTCATTT
TTAAGAATAACGATGCCTCTGAATAGCTAATGTGTAGCCCAAACCATCCC
TTTGTCCACTTTTTCGGTACTTTACCTTACAGATATTTGGAACAGGAAAG
GTGCTGGCCTGGTCAATGTAGGGATCACAGAAGTACCAGTCGTGGTACAG
AATGTGATCCTAGATTATATGGAGGAAGATGTCCAAGAATATGAGGTAAG
AAATGTTGCCAACTGTCTTTTCTAATTACTTATAAGTGGATGCAGGATAG
GATTTCTGGAAACTGAAACACCGGAATAAAATAGGCCGTTAACTgaaaaa
ccaaagaaatataGGATCAACACAGTGATACTGAATTTCCATACACCCCC
CCCACTTATGAGTTAAAAAAGCTTTTTACCATACCATTTTGAGTTGCTAA
AACGGTTGGTGTAATTATTcttgcatttttaaaggttagcGTAGATAGAT
AATTCAGCTGTTTTCTGTTGAGGGGTTATTGTGGTTTCTTCTGGAAATAG
AGTAAAATTTTTGGAATAGGTAGAATTTTATctccttgttttttatttgt
ttggcTTAGATTAAATGATTAGATTTCGAAACTTCTCAAACTTCCCACAG
TCGTTGTCTTGCAGCTTTTATTATATATAGAATCTTTATTTCAGCCTAAT
TATTATGAATTTTTGGATGAACAGAGAGAAGCAGAAGAAGAAAGAACAAC
AGGGGAAGAATGTGAAGGCACTATGAACTTTGAGATGAACATGTTAGTAC
AGATTGTATTGTGCTAGTCTGTAGTCAACCCTAGACTTGTATATTATGTG
CTTGAATTTAGTAGTCTATTTGTAGTAGCCTAAATTGAGAGTCACACTTG
TTTAAATTTTACAGTGTTTTAAGTTATCTATTCTACTTGCACAAAATTAT
ATGCTAagcattttttcttttaaaggtGTACTGCAGCTGATGGAAATTTT
CTTAAAGATGATTTGAGGTTAGGCTAATTTAGGCACAAAATAAGGATTGC
TATTATACANCGTTAACTgaaaaaccaaagaaatataGGATCAACACAGT
GATACTGAATTTCCATACACCCCCCCCACTTATGAGTTAAAAAAGCTTTT
TACCATACCATTTTGAGTTGCTAAAACGGTTGGTGTAATTATTcttgcat
ttttaaaggttagcGTAGATAGATAATTCAGCTGTTTTCTGTTGAGGGGT
TATTGTGGTTTCTTCTGGAAATAGAGTAAAATTTTTGGAATAGGTAGAAT
TTTATctccttgttttttatttgtttggcTTAGATTAAATGATTAGATTT
CGAAACTTCTCAAACTTCCCACAGTCGTTGTCTTGCAGCTTTTATTATAT
ATAGAATCTTTATTTCAGCCTAATTATTATGAATTTTTGGATGAACAGAG
AGAAGCAGAAGAAGAAAGAACAACAGGGGAAGAATGTGAAGGCACTATGA
ACTTTGAGATGAACATGTTAGTACAGATTGTATTGTGCTAGTCTGTAGTC
AACCCTAGACTTGTATATTATGTGCTTGAATTTAGTAGTCTATTTGTAGT
AGCCTAAATTGAGAGTCACACTTGTTTAAATTTTACAGTGTTTTAAGTTA
TCTATTCTACTTGCACAAAATTATATGCTAagcattttttcttttaaagg
tGTACTGCAGCTGATGGAAATTTTCTTAAAGATGATTTGAGGTTAGGCTA
ATTTAGGCACAAAATAAGGATTGCTATTATACAATCTTaggaaattttat
tgaaagatGTCATTAGAATAAGATTTACAGTGTATATTAAATAATCCATG
CAGAATAGGGATTGGTTACACATCTAGGTAAAGTGGAATTAGAGACCAAA
GTGAAATATTGATCCTGTTATACTTNTACACATCTAGGTAAAGTGGAATT
GGAGACCAAAGTGAAATATTGATCCTGTTATACTTTTGACTTCACCTAAA
AAGTTTTGCAGCTGCTGGGTCCTAATTAGCCTGAGGCTAATTCTAATTag
ctgatattttttggaaaagaatttGTAAAAATCATGAACTGCTTCACATG
TCTATGCACAGGTATACAACAAGTAGGGTTGTGTATTTTAACCAAAGTTC
ACTTTACTTCACTTCTGCTTACCATACGTCCTCTTATTCAAAATGGGAAA
TAATTAAAGAATTTTGGTAAAATGACTCACTAAAGCCTTAGCATTTTGAT
TTTCTGTCCAGATTCACCACATTTTATATTCTGAACCTTTACGTACTTTA
TTGCATGAAAATTTTGTGGTCNGGGAAATAATTAAAGAATTTTGGTAAAA
TGACTCACTAAAGCCTTAGCATTTTGATTTTCTGTCCAGATTCACCACAT
TTTATATTCTGAACCTTTACGTACTTTATTGCATGAAAATTTTGCGGTCA
TTTTAATTTTGCGGTCCAAGAGAAACGTGTATTTTGCGGCATTTTGGTTT
CGTAGGCCGATTTGTACTTAAAAGACTagaaaaatacacaatttttatat
attttagatACGTAGtcaaaaaaacagattttttatGCTGACCATAAAAT
CGTTTTTCGCGGCATTTTAATTTCACAGTTTTTCTACCTCGACCACGAAA
CTGCAAAACTTTCATGCAACAAAGTAGTCCTCAGAatctgaaacattttt
ttcattaatgAAACCTCTTATTTTCTATTTCTCATAGCTCATTCTTTAAA
TCATATGATCCAGCAAACCAGCTAACCAGTGAACCGGATGAACAACACGA
TGGGTAATTGTTTTATAGATTCTGTTTTTGAATATCTTCAGTATACATCT
AAACCTTTACATACTTTATTGCATGAAAATTTTGCGGTCATTTTAATTTT
GTGGTCCAAGAGAAAAGTGTATTTTGCGGCATTTTGATTTCGTGGTTCCG
AAGCAGTAAAAGGTGAAAATAGGCCGATTTGTACTTAAAAGACTAGAAAA
ATACAcaacttttatatattttaGATACGTAGTcgaaaaaacagattttt
tatGCTGACCATAAAATCGTTTTTCGCGGCATTTTAATTTCACAGTTTTT
CTACCTCAACCACGAAACCGCGAAACTTTCATGCAATAAAGTAGTCCTCA
GAatctgaaacatttttttcattaatgAAAACTCTTATTTTCTATTTCTC
ATAGCTCATTCTTTAAATCATATGATCCAGCAAACCAGCTAACCAGTGAA
CCGGATGAACAACACGATGTGTAATTGTTTTATAGATTCTGTTTTTGAAT
ATCTTAAGTATACATCTTATTGCTGcgtgtattttaatttttatttcttg
atttctttaatttaaaagttcaaataaATCTATAATATATTTTCCATCTT
TCAACCCTTGTATTTAGCTGAGAAAAAATCTCAGAAACTGAAAGCCTCCA
CACAGGACTTTTTTATTCCCACCCGATTctaatttgtttttgaaaatatt
tccatcCCCAAGACTTTTAGAGACAGAAAAGTAGATTCATTTAAATGTAG
CTTTTCACATctttcaaaatcgaaaaaaaattaccatgGTGGTGGGTAAC
ATTCAATTTGTTTCCAAGTGTTCAATAAGCTATCGATTAACATATATCTA
CAGAACATTTAACACAAGAATGtccttgaaaatttcaacaCAGTGTCAAA
AAATTCCGTTGAAagcatttttattcaattttggtctttatttgtcctat
ttttcaactaaaaaaaattgtcctaTTTACTTAACTTGTAAGTACAAAAG
TTGACTGGGAGCGGAGATCCAAtgagaatttttcttttccaaatgTTGAT
CTAACTGTAGGGGAAGTACCTATCCACCTTttaaaccaaccttttcaatt
GAGTACAGAGATGCCTTTTcatggttttgtttttgtttatttataaaaat
taaatttgtgttttgaattttcTAGTACAAACCTGTTAGCTTTGATAAGT
GACCTGGGTGGTGGCAGCATACCAATGGATCAGAATATATTGAGACCAGC
CAACAGGTTAGATGCTCATATTTTAAGTTAAAGAATTAGCTTAAAGGGCT
GGTAGATATTCTTATTTACTACTTTTTGTGAGATGTGGAAAAAAACTATA
CAACTTTTCCTAAAAGTTTTTTGTCCTATTTTTCAGCAATTCTCAGTTGG
AATTTAGCTTAACAGCACTTTTCAAATCTTAAACCTTCTTGCATCTAGGG
TGGGTCAAACCCCTCCacaaaactgaaatttttttgtccAATCGACTTGA
AAATTTGCTAGTGTACACCaaatctaacttttttttttaaactttaatct
CTTTGCCCCCAATTTTGCATGTGGCGGCCATCaaaagaattattgatttt
CGGAACttgaggtcctataaattaaccgttgcccgtttgtttgtttgttc
gttcgtttgtttgttcgtttatgagcttttcttatgagataaatgttttt
tgccaatgaaattgtttctttacagaaaccAACCTTTTATCTTTACAGAA
GATTTGAGTTtaggtttgaaattttgagttgCTAAAATGTTTGCTCATAA
ATATGGAACTGGGCCAAATTCTATATATATCTATAAGCAcattggaaaaa
aacatttaactGGCCTGAAAAGCTTtaattcattcaatttttttatacag
GATCACACAAAGCATTAACGAAATATCGCACAGTNTAAATTAGCTATAAG
CacattggaaaaaaatatttaactgGCCTGAAAAGCTTtaattcattcaa
tttttttatacagGATCACACAAAGCATTAACGAAATATCGCACAGTGAA
CAGACGTTACCCAGTACTATAAAAGCACCCGTTTGCAAAAAAGCACCCAG
TTGCAAAAAAGCAACCAGTAGCAGTACTAAAGAAACTTATGGCAAAATGG
TGAGAAGTTTTACTTTAATATTCTAATCGATATAGTATTTGTAACTAAAT
GGACTTGGTTTccttttcaatcatttttatat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025680XLOC_025680Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041768-exon-sc0003014-1491911889:6397..6508TCONS_00041768-exon-sc0003014-1491911889:6397..6508Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1510915933:6397..6508TCONS_00041768-exon-sc0003014-1510915933:6397..6508Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1575043694:6397..6508TCONS_00041768-exon-sc0003014-1575043694:6397..6508Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1491911889:8674..8857TCONS_00041768-exon-sc0003014-1491911889:8674..8857Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1510915933:8674..8857TCONS_00041768-exon-sc0003014-1510915933:8674..8857Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1575043694:8674..8857TCONS_00041768-exon-sc0003014-1575043694:8674..8857Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1491911889:9129..9241TCONS_00041768-exon-sc0003014-1491911889:9129..9241Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1510915933:9129..9241TCONS_00041768-exon-sc0003014-1510915933:9129..9241Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1575043694:9129..9241TCONS_00041768-exon-sc0003014-1575043694:9129..9241Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1491911889:11734..11799TCONS_00041768-exon-sc0003014-1491911889:11734..11799Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1510915933:11734..11799TCONS_00041768-exon-sc0003014-1510915933:11734..11799Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1575043694:11734..11799TCONS_00041768-exon-sc0003014-1575043694:11734..11799Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1491911889:12201..12266TCONS_00041768-exon-sc0003014-1491911889:12201..12266Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1510915933:12201..12266TCONS_00041768-exon-sc0003014-1510915933:12201..12266Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1575043694:12201..12266TCONS_00041768-exon-sc0003014-1575043694:12201..12266Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1491911889:12972..13052TCONS_00041768-exon-sc0003014-1491911889:12972..13052Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1510915933:12972..13052TCONS_00041768-exon-sc0003014-1510915933:12972..13052Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1575043694:12972..13052TCONS_00041768-exon-sc0003014-1575043694:12972..13052Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1491911889:13810..14028TCONS_00041768-exon-sc0003014-1491911889:13810..14028Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1510915933:13810..14028TCONS_00041768-exon-sc0003014-1510915933:13810..14028Clytia hemisphaericaexon
TCONS_00041768-exon-sc0003014-1575043694:13810..14028TCONS_00041768-exon-sc0003014-1575043694:13810..14028Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003014supercontigsc0003014:6397..14028 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000249793	0.869135	0.595107	0	13.3094	6.12035	9.32419	4.51771	3.29269	7.58138e-06	3.57416	4.24975e-07	3.91004	10.754	3.95397	2.12724	2.5204	4.62551	1.91912	3.06865	2.58036	0.310775	2.59939	2.29967	2.46931	5.41139	9.77829	4.7062	0.00126273	0.108456
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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