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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041766 ID=TCONS_00041766|Name=TCONS_00041766|organism=Clytia hemisphaerica|type=transcript|length=1127bp
CATTTACATACCCCTACCCTTCTACCAACACCGCTATACCTATCATTTAT
CGTTCTTTAAAATACTATTTCACCATTTACATCAAGCAAATTACAATTGG
TTGTCATTGGAAGCATTTACACCATTTACACCAATGTCATCATTTACATA
CCCCTACCCCTATACTAACACATCTATACATATCATTTATCGTCCTTTTA
AATACTTTTACACCATTTACATCAAGCAAATTACAATTGGTTGTCATTGT
AACCATTTACACCATTTACACCAATGTCACCATTTACATACCCCTACCCC
TATACTAACACAGCTATACATATCTTTATCGTTCTTTGAAATACTATTTA
ACCATTTACACCAAGCAATATTACCATTGGTTGTCGTTGGAACCATTTAC
ACCATTTACACCAATGTCACCATTTACATACCCCTACCCTTCTACCAACA
CAGCTATACATATCATTTATCGTTCTTTGAAATACTATTTAACCATTTAC
ACCAAGCGAATTACCATTGGTTGTCATTGGAACCATTTACACCATTTACA
CCAATGTCACCATTTACATACCCCTCCCCTTCTACCAACACAGCTATACA
TATCATTTATCGTTCTTTGAAATACTATTTAACCATTTACACCAAGCGAA
TTACCATTGGTTGTCATTGGAACCATTTACACCATTTACCCCGATGTCAC
CATTTACATACCCCTACCCCTATACTAACACAGCTATACATATTATTTAT
CGTTCTTTGAAATACTATTTAACCATTTACACCAAGCCAATTACCATTGG
TTGTCATTGGAACCATTTACACCATTTACACCAATGTCACCATTTACATA
CCCCTACCCCTATACCAACACAGCTATACATATCATTTATCGTTCTTTAA
AATACTTTTCAACCATTTACACCAAGCCAATAACCATTGGTTGTCATTGG
AACCATTTACACCATTTACACCAATGTCACCATTTACATACCCCTACCCC
TATACCAACACAGCTATACATATCATTTATCGTTCTTTAAAATACTTTTC
AACCATTTACACCAAGCCAATAACCATTGGTTGTCATTGGAACCATTTAC
ACCATTTACACCAATGTCACCATTTAC Run BLAST on NCBI protein sequence of TCONS_00041766-protein >TCONS_00041766-protein ID=TCONS_00041766-protein|Name=TCONS_00041766-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
IYIPLPFYQHRYTYHLSFFKILFHHLHQANYNWLSLEAFTPFTPMSSFTY
PYPYTNTSIHIIYRPFKYFYTIYIKQITIGCHCNHLHHLHQCHHLHTPTP
ILTQLYISLSFFEILFNHLHQAILPLVVVGTIYTIYTNVTIYIPLPFYQH
SYTYHLSFFEILFNHLHQANYHWLSLEPFTPFTPMSPFTYPSPSTNTAIH
IIYRSLKYYLTIYTKRITIGCHWNHLHHLPRCHHLHTPTPILTQLYILFI
VL Run BLAST on NCBI transcript from alignment at sc0003013:3410..4536 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041766 ID=TCONS_00041766|Name=TCONS_00041766|organism=Clytia hemisphaerica|type=transcript|length=1127bp|location=Sequence derived from alignment at sc0003013:3410..4536 (Clytia hemisphaerica)
GTAAATGGTGACATTGGTGTAAATGGTGTAAATGGTTCCAATGACAACCA
ATGGTTATTGGCTTGGTGTAAATGGTTGAAAAGTATTTTAAAGAACGATA
AATGATATGTATAGCTGTGTTGGTATAGGGGTAGGGGTATGTAAATGGTG
ACATTGGTGTAAATGGTGTAAATGGTTCCAATGACAACCAATGGTTATTG
GCTTGGTGTAAATGGTTGAAAAGTATTTTAAAGAACGATAAATGATATGT
ATAGCTGTGTTGGTATAGGGGTAGGGGTATGTAAATGGTGACATTGGTGT
AAATGGTGTAAATGGTTCCAATGACAACCAATGGTAATTGGCTTGGTGTA
AATGGTTAAATAGTATTTCAAAGAACGATAAATAATATGTATAGCTGTGT
TAGTATAGGGGTAGGGGTATGTAAATGGTGACATCGGGGTAAATGGTGTA
AATGGTTCCAATGACAACCAATGGTAATTCGCTTGGTGTAAATGGTTAAA
TAGTATTTCAAAGAACGATAAATGATATGTATAGCTGTGTTGGTAGAAGG
GGAGGGGTATGTAAATGGTGACATTGGTGTAAATGGTGTAAATGGTTCCA
ATGACAACCAATGGTAATTCGCTTGGTGTAAATGGTTAAATAGTATTTCA
AAGAACGATAAATGATATGTATAGCTGTGTTGGTAGAAGGGTAGGGGTAT
GTAAATGGTGACATTGGTGTAAATGGTGTAAATGGTTCCAACGACAACCA
ATGGTAATATTGCTTGGTGTAAATGGTTAAATAGTATTTCAAAGAACGAT
AAAGATATGTATAGCTGTGTTAGTATAGGGGTAGGGGTATGTAAATGGTG
ACATTGGTGTAAATGGTGTAAATGGTTACAATGACAACCAATTGTAATTT
GCTTGATGTAAATGGTGTAAAAGTATTTAAAAGGACGATAAATGATATGT
ATAGATGTGTTAGTATAGGGGTAGGGGTATGTAAATGATGACATTGGTGT
AAATGGTGTAAATGCTTCCAATGACAACCAATTGTAATTTGCTTGATGTA
AATGGTGAAATAGTATTTTAAAGAACGATAAATGATAGGTATAGCGGTGT
TGGTAGAAGGGTAGGGGTATGTAAATG Coding sequence (CDS) from alignment at sc0003013:3410..4536 >TCONS_00041766 ID=TCONS_00041766|Name=TCONS_00041766|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at sc0003013:3410..4536 (Clytia hemisphaerica)
TCAAAGAACGATAAATAATATGTATAGCTGTGTTAGTATAGGGGTAGGGG
TATGTAAATGGTGACATCGGGGTAAATGGTGTAAATGGTTCCAATGACAA
CCAATGGTAATTCGCTTGGTGTAAATGGTTAAATAGTATTTCAAAGAACG
ATAAATGATATGTATAGCTGTGTTGGTAGAAGGGGAGGGGTATGTAAATG
GTGACATTGGTGTAAATGGTGTAAATGGTTCCAATGACAACCAATGGTAA
TTCGCTTGGTGTAAATGGTTAAATAGTATTTCAAAGAACGATAAATGATA
TGTATAGCTGTGTTGGTAGAAGGGTAGGGGTATGTAAATGGTGACATTGG
TGTAAATGGTGTAAATGGTTCCAACGACAACCAATGGTAATATTGCTTGG
TGTAAATGGTTAAATAGTATTTCAAAGAACGATAAAGATATGTATAGCTG
TGTTAGTATAGGGGTAGGGGTATGTAAATGGTGACATTGGTGTAAATGGT
GTAAATGGTTACAATGACAACCAATTGTAATTTGCTTGATGTAAATGGTG
TAAAAGTATTTAAAAGGACGATAAATGATATGTATAGATGTGTTAGTATA
GGGGTAGGGGTATGTAAATGATGACATTGGTGTAAATGGTGTAAATGCTT
CCAATGACAACCAATTGTAATTTGCTTGATGTAAATGGTGAAATAGTATT
TTAAAGAACGATAAATGATAGGTATAGCGGTGTTGGTAGAAGGGTAGGGG
TATGTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041766-exon-sc0003013-1491911889:3410..4536 | TCONS_00041766-exon-sc0003013-1491911889:3410..4536 | Clytia hemisphaerica | exon |
| TCONS_00041766-exon-sc0003013-1510915933:3410..4536 | TCONS_00041766-exon-sc0003013-1510915933:3410..4536 | Clytia hemisphaerica | exon |
| TCONS_00041766-exon-sc0003013-1575043694:3410..4536 | TCONS_00041766-exon-sc0003013-1575043694:3410..4536 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003013 | supercontig | sc0003013:3410..4536 . |
Blast
The following BLAST results are available for this feature:
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