TCONS_00041761 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041761
Unique NameTCONS_00041761
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041761 ID=TCONS_00041761|Name=TCONS_00041761|organism=Clytia hemisphaerica|type=transcript|length=708bp
CATCTTTGTGGAATTATTATAGTACGGACGCCAATCCTGCTGATTTGACG
ACACGCAAAGAGAATTCCGTTCACGACGATTTGTGGTGGCAAGCACCATC
TTTCCTGTTGGAGAACATTGAGAAAACTTTACACGAAAAGAATCTTCCTT
CACTGGGAGGGGATTCCCTGATTGAGTTTGAGAGAGAGGAAAAGAAATGT
TCTCATTAATATTAATGAGGTACACCATTTAATTGGAAAAGTTATTGTTA
TTGAGAAGTTCTTGTGTTTACAAAAGCTGTACAGAATAACAGGTtatgtt
ttgagatttttgagaaatattcgAGTACCTAAAGAAGAAAGAGTTATGAC
GTCAGAACTGAATGTTGACGAAATACGAGAGGCGGAGTTTCGATGGATCA
AAAAGAACCAGACAATAATAGATCAAGAAGACCGACAACAGTTAGAAAAA
TGCTTGAACGTTACCCTCGATACAAAAAGTCTATTATTATTCCATACGAA
ACCAGATCTCCTATTGTTATAAACAGAGAACACAAACTCGCTGAATTGAT
TACAATTGATTGTCATAGACTAGTACAACACCTCGGTGCTCAACGAACAC
TTCCTGAAATTAGAAATCGTTTTTGGATTACGCGCGGTCGTAGCTTCGTA
AGAGGCGTTCTCGCAAAATATCCGTGCCCTTGTAAAAAGTTCAACCCTAG
ACATTATC
Run BLAST on NCBI

transcript from alignment at sc0003008:4840..5547

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041761 ID=TCONS_00041761|Name=TCONS_00041761|organism=Clytia hemisphaerica|type=transcript|length=708bp|location=Sequence derived from alignment at sc0003008:4840..5547 (Clytia hemisphaerica)
GATAATGTCTAGGGTTGAACTTTTTACAAGGGCACGGATATTTTGCGAGA
ACGCCTCTTACGAAGCTACGACCGCGCGTAATCCAAAAACGATTTCTAAT
TTCAGGAAGTGTTCGTTGAGCACCGAGGTGTTGTACTAGTCTATGACAAT
CAATTGTAATCAATTCAGCGAGTTTGTGTTCTCTGTTTATAACAATAGGA
GATCTGGTTTCGTATGGAATAATAATAGACTTTTTGTATCGAGGGTAACG
TTCAAGCATTTTTCTAACTGTTGTCGGTCTTCTTGATCTATTATTGTCTG
GTTCTTTTTGATCCATCGAAACTCCGCCTCTCGTATTTCGTCAACATTCA
GTTCTGACGTCATAACTCTTTCTTCTTTAGGTACTcgaatatttctcaaa
aatctcaaaacataACCTGTTATTCTGTACAGCTTTTGTAAACACAAGAA
CTTCTCAATAACAATAACTTTTCCAATTAAATGGTGTACCTCATTAATAT
TAATGAGAACATTTCTTTTCCTCTCTCTCAAACTCAATCAGGGAATCCCC
TCCCAGTGAAGGAAGATTCTTTTCGTGTAAAGTTTTCTCAATGTTCTCCA
ACAGGAAAGATGGTGCTTGCCACCACAAATCGTCGTGAACGGAATTCTCT
TTGCGTGTCGTCAAATCAGCAGGATTGGCGTCCGTACTATAATAATTCCA
CAAAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025673XLOC_025673Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041761-exon-sc0003008-1491911889:4840..5547TCONS_00041761-exon-sc0003008-1491911889:4840..5547Clytia hemisphaericaexon
TCONS_00041761-exon-sc0003008-1510915933:4840..5547TCONS_00041761-exon-sc0003008-1510915933:4840..5547Clytia hemisphaericaexon
TCONS_00041761-exon-sc0003008-1575043694:4840..5547TCONS_00041761-exon-sc0003008-1575043694:4840..5547Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003008supercontigsc0003008:4840..5547 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.138663	0.966005	0.315028	0.631425	1.11893	0.457036	0.737796	0.239651	0.667903	1.08047	0.386885	0.841335	1.26939	2.11676	2.7503	0.320237	0.71117	0.302314	0.576304	0.39244	0.201178	0.0815192	0.222338	0.152669	0.476887	0.097489	0.104043	0.236739	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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