TCONS_00041758 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041758
Unique NameTCONS_00041758
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length538

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041758 ID=TCONS_00041758|Name=TCONS_00041758|organism=Clytia hemisphaerica|type=transcript|length=538bp
GGCTAAAACAGAGCTAAGATTAAAGTGTCACAATTTAaaccaaaagtttt
aaaataacaaaagaattaattgTTTATACATAAATCTTACAAAAACGAAG
CAAAAAACGaagcaaaaaattgaattagTCCATCCATCACACTATCTAAC
TATATCGATGTTCATGGTAATTAGTTTTCAGAAGAAATATTTCTCCAGTG
TAGAAGAACGAGGGTTCAACCGAAACCAAACATGTATGACAGCGTAAACA
ATTTGAATTGTTGCCAAAGGCGTGAATGTTAGAATCACCACAAGGTAATC
TATTCCTCTCATACAACCTGAATCAAAAGGACTTTGGAATATCTTTCCTC
CATCCTCAACAGTAAAACAGGATCGCTCAATTTTGCCGGTACCGTATTGG
TAAGTTGAGCCTATGACACGACACATGGTTGCCATGGCGATTGGGATCAT
CATATAGGAGAAAAACTTCATCTTGACTGATGCGTCTTTCTCTTGGTTAG
GGTCGAGTGGTTTCATGTTGGCCCGTTTTCGATGTTNN
Run BLAST on NCBI

protein sequence of TCONS_00041758-protein

>TCONS_00041758-protein ID=TCONS_00041758-protein|Name=TCONS_00041758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
XHRKRANMKPLDPNQEKDASVKMKFFSYMMIPIAMATMCRVIGSTYQYGT
GKIERSCFTVEDGGKIFQSPFDSGCMRGIDYLVVILTFTPLATIQIVYAV
IHVWFRLNPRSSTLEKYFF
Run BLAST on NCBI

transcript from alignment at sc0003005:854..1391

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041758 ID=TCONS_00041758|Name=TCONS_00041758|organism=Clytia hemisphaerica|type=transcript|length=538bp|location=Sequence derived from alignment at sc0003005:854..1391 (Clytia hemisphaerica)
NNAACATCGAAAACGGGCCAACATGAAACCACTCGACCCTAACCAAGAGA
AAGACGCATCAGTCAAGATGAAGTTTTTCTCCTATATGATGATCCCAATC
GCCATGGCAACCATGTGTCGTGTCATAGGCTCAACTTACCAATACGGTAC
CGGCAAAATTGAGCGATCCTGTTTTACTGTTGAGGATGGAGGAAAGATAT
TCCAAAGTCCTTTTGATTCAGGTTGTATGAGAGGAATAGATTACCTTGTG
GTGATTCTAACATTCACGCCTTTGGCAACAATTCAAATTGTTTACGCTGT
CATACATGTTTGGTTTCGGTTGAACCCTCGTTCTTCTACACTGGAGAAAT
ATTTCTTCTGAAAACTAATTACCATGAACATCGATATAGTTAGATAGTGT
GATGGATGGActaattcaattttttgcttCGTTTTTTGCTTCGTTTTTGT
AAGATTTATGTATAAAcaattaattcttttgttattttaaaacttttggt
tTAAATTGTGACACTTTAATCTTAGCTCTGTTTTAGCC

Coding sequence (CDS) from alignment at sc0003005:854..1391

>TCONS_00041758 ID=TCONS_00041758|Name=TCONS_00041758|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0003005:854..1391 (Clytia hemisphaerica)
NAACATCGAAAACGGGCCAACATGAAACCACTCGACCCTAACCAAGAGAA
AGACGCATCAGTCAAGATGAAGTTTTTCTCCTATATGATGATCCCAATCG
CCATGGCAACCATGTGTCGTGTCATAGGCTCAACTTACCAATACGGTACC
GGCAAAATTGAGCGATCCTGTTTTACTGTTGAGGATGGAGGAAAGATATT
CCAAAGTCCTTTTGATTCAGGTTGTATGAGAGGAATAGATTACCTTGTGG
TGATTCTAACATTCACGCCTTTGGCAACAATTCAAATTGTTTACGCTGTC
ATACATGTTTGGTTTCGGTTGAACCCTCGTTCTTCTACACTGGAGAAATA
TTTCTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025670XLOC_025670Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041758-proteinTCONS_00041758-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041758-exon-sc0003005-1491911889:854..1391TCONS_00041758-exon-sc0003005-1491911889:854..1391Clytia hemisphaericaexon
TCONS_00041758-exon-sc0003005-1510915933:854..1391TCONS_00041758-exon-sc0003005-1510915933:854..1391Clytia hemisphaericaexon
TCONS_00041758-exon-sc0003005-1575043694:854..1391TCONS_00041758-exon-sc0003005-1575043694:854..1391Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003005supercontigsc0003005:854..1391 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.50021	2.84496	3.76617	2.65534	0.233514	0.811979	0.90987	1.40286	0.582993	0.697518	0.195528	1.41955	1.64745	1.88912	3.61414	2.09827	0.0150888	0.669433	0.40735	0.740658	0	0.152565	0.807705	1.21473	0	0	0.0134793	0.157804	0.397297	0.756018
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041758 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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