TCONS_00041751 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041751
Unique NameTCONS_00041751
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length372

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041751 ID=TCONS_00041751|Name=TCONS_00041751|organism=Clytia hemisphaerica|type=transcript|length=372bp
GCAGCCAAGACACTAGCTTCTGTAGATGGTGCAGACACAGCGTTTTTCTT
GGCAAAAATGATTAAAGAATTCTTGTCCAAGACACCAGAAGTTGTCTGCC
TAACTGATAGCAGATCACTCTTTGAATGTGCCGGTTCAACAAAGGCAGTG
ACTGACAGACGACTCCGTGTAGAGATAAATGCTCTACGTCAAATGATCAA
TACTGACGAAATTATCCTGCAATGGATTGGCGGAAGTCATCAACTGGCCA
ACGTTCTGACAAAGAAAGGCGCATCCCCCTTTTCCCTAATGGAAGTGCTT
GAATCAGGGGATTCGACATCGGTCGTAATTAATGGTGAACAATAACCACA
TCACCATTGTTCgtgttaaaac
Run BLAST on NCBI

protein sequence of TCONS_00041751-protein

>TCONS_00041751-protein ID=TCONS_00041751-protein|Name=TCONS_00041751-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
AAKTLASVDGADTAFFLAKMIKEFLSKTPEVVCLTDSRSLFECAGSTKAV
TDRRLRVEINALRQMINTDEIILQWIGGSHQLANVLTKKGASPFSLMEVL
ESGDSTSVVINGEQ
Run BLAST on NCBI

transcript from alignment at sc0003004:12439..12810

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041751 ID=TCONS_00041751|Name=TCONS_00041751|organism=Clytia hemisphaerica|type=transcript|length=372bp|location=Sequence derived from alignment at sc0003004:12439..12810 (Clytia hemisphaerica)
gttttaacacGAACAATGGTGATGTGGTTATTGTTCACCATTAATTACGA
CCGATGTCGAATCCCCTGATTCAAGCACTTCCATTAGGGAAAAGGGGGAT
GCGCCTTTCTTTGTCAGAACGTTGGCCAGTTGATGACTTCCGCCAATCCA
TTGCAGGATAATTTCGTCAGTATTGATCATTTGACGTAGAGCATTTATCT
CTACACGGAGTCGTCTGTCAGTCACTGCCTTTGTTGAACCGGCACATTCA
AAGAGTGATCTGCTATCAGTTAGGCAGACAACTTCTGGTGTCTTGGACAA
GAATTCTTTAATCATTTTTGCCAAGAAAAACGCTGTGTCTGCACCATCTA
CAGAAGCTAGTGTCTTGGCTGC

Coding sequence (CDS) from alignment at sc0003004:12439..12810

>TCONS_00041751 ID=TCONS_00041751|Name=TCONS_00041751|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0003004:12439..12810 (Clytia hemisphaerica)
TTATTGTTCACCATTAATTACGACCGATGTCGAATCCCCTGATTCAAGCA
CTTCCATTAGGGAAAAGGGGGATGCGCCTTTCTTTGTCAGAACGTTGGCC
AGTTGATGACTTCCGCCAATCCATTGCAGGATAATTTCGTCAGTATTGAT
CATTTGACGTAGAGCATTTATCTCTACACGGAGTCGTCTGTCAGTCACTG
CCTTTGTTGAACCGGCACATTCAAAGAGTGATCTGCTATCAGTTAGGCAG
ACAACTTCTGGTGTCTTGGACAAGAATTCTTTAATCATTTTTGCCAAGAA
AAACGCTGTGTCTGCACCATCTACAGAAGCTAGTGTCTTGGCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025664XLOC_025664Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041751-exon-sc0003004-1491911889:12439..12810TCONS_00041751-exon-sc0003004-1491911889:12439..12810Clytia hemisphaericaexon
TCONS_00041751-exon-sc0003004-1510915933:12439..12810TCONS_00041751-exon-sc0003004-1510915933:12439..12810Clytia hemisphaericaexon
TCONS_00041751-exon-sc0003004-1575043694:12439..12810TCONS_00041751-exon-sc0003004-1575043694:12439..12810Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041751-proteinTCONS_00041751-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003004supercontigsc0003004:12439..12810 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.652965	0.424496	0.858869	0.427426	0.983011	0	0.308978	0.283481	1.23849	1.16244	1.14971	1.74578	0.596428	0.977804	1.25204	0.265265	1.53236	1.13245	0.462744	0	0.28694	1.22588	0.499118	0.319291	1.26569	0.834238	1.02971	0.441517	0	0.246132
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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