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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041749 ID=TCONS_00041749|Name=TCONS_00041749|organism=Clytia hemisphaerica|type=transcript|length=1217bp
GTCCTTCTTGGGTGAATCAAGACATATAATCActctaaaaacattttaaa
agccTCTGTTGCATCTTGGGATTTGAGTTGTTAGGTAATTATGATGGGAA
TTATATTTAACGTGTGATACATTCTATTCCAAGCACCTCATTGGgtgaat
tttaaaacaagtgAATAGTAAATCACATAATAGCTCTTATTATAAAGCCT
CAGTATAAAAAGAGACGAACGTTAGACTTTCAAATCAAACGAAAAGCAAA
TTTCAAGCGAAGTATACAGTGCAATAGTGAAATTGCCAACAACAGCAATG
GACATCAAAGTACTCATTTTATTCACCGCGGTTTTGGCGATTGCTTATTC
CTATCGCATAAGCAATGACGACTCTAACACAGGAAGGGATTTCTACCAAG
CACTACAAGATATGATTGATGAACGTGTGGCAGAAAAAATGGATCCTAAA
CATGAATGTAAATTTGGAGGTCTATGTAACAATGTTTACAGCTACGGATG
TCATAATTATATGAGGAAATGTGATGGTTCAGGATGCACAGAAATTGGAA
CTTGCTGGCGTCAATGTTACTCAAACTCGAAGACATGGTGTAGATTGTCA
GACGAAGCCAGACGTGACAAATTCTTTTCTTGTCAAAAAGATTCAGATTG
TGCACATACCAGAGAAAGAGGATTGTTAGGAAAATCTGCTAAGGAGGTTT
GCGAAATGAGATATTCTGCTGGTGGCTCCGGGCCAATATGTCATGGATCA
ATAAATCCTTAAATGTTGAAAGAGGAAGAAAATTTACGGACAGTAGGAAA
CAAGTTTCTCCTTCGAATTATGTATTATATACGATTTTATAACTTACACC
GCAATAATTTTCTCgattttcctttgtttgatttttagtgcttctttgta
atttttgaaaaataacttttttaaataatttttttattttcttctaatAG
TTTTCTAAGTATGGTTATTAGTTCCAGAAAATATAATTGTTGTgagaaat
aatattttttcttctgttGGTGCATTGGTTTGCCTCCCTtttaattactt
taatgggataaattttcgcggggattaaatttcgcggttgagctcatccg
cgaaattttaagatttcgcggggattaaatttcgcggttgagctcatccg
cgaaattttaagatttcgcggggattaattttcgcggatgagggattttc
tgatttttcgcggggat Run BLAST on NCBI transcript from alignment at sc0003001:8309..10645- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041749 ID=TCONS_00041749|Name=TCONS_00041749|organism=Clytia hemisphaerica|type=transcript|length=2337bp|location=Sequence derived from alignment at sc0003001:8309..10645- (Clytia hemisphaerica)
GTCCTTCTTGGGTGAATCAAGACATATAATCACTCTAAAAACATTTTAAA
AGCCTCTGTTGCATCTTGGGATTTGAGTTGTTAGGTAATTATGATGGGAA
TTATATTTAACGTGTGATACATTCTATTCCAAGCACCTCATTGGGTGAAT
TTTAAAACAAGTGAATAGTAAATCACATAATAGCTCTTATTATAAAGCCT
CAGTATAAAAAGAGACGAACGTTAGACTTTCAAATCAAACGAAAAGCAAA
TTTCAAGCGAAGTATACAGTGCAATAGTGAAATTGCCAACAACAGTAAGT
ACACATTTATTAATTAATCAGATTTTTGAAAGAAATGACTTTTTCAAAGT
TTTCTCCCTACACTTTTTCAATAACTCCATAAGAAACCAATACTGAATCT
GAGTGACGAGATATTGAAACAAATTTTATAGTTCAGCAAAATATAAACAA
CAATTTTTTTCTTGGTTTTTCTTTAGGCAATGGACATCAAAGTACTCATT
TTATTCACCGCGGTTTTGGCGATTGCTTATTCCTATCGCATAAGCAATGA
CGACTCTAACACAGGAAGGGATTTCTACCAAGCACTACAAGATATGATTG
ATGAACGTGTGGCAGAAAAAATGGATCCTAAACATGAATGTAAATTTGGA
GGTCTATGTAACAATGTTTACAGCTACGGATGTCATAATTATATGAGGAA
ATGTGATGGTTCAGGATGCACAGAAATTGTAAGTAACATTTTGAAGCATT
TTGGTTTTGCAGCTCTCTGTGAATGTATTTTGACTACTTGATTGAACCAC
TTTTGTATTGTCACACGTATGTACATTTACGTTAACTGTGCCTGAAAAAC
TATTCTTGTTTTTCGAAGCACCCTTCTCCCTGGGATTTCCCATATTAATT
TCCGCCCATCATTTAGCAAGATCGCACGGAAGAAAAGGGAAAGCAATCTA
TATATTAATACGCTAAAACGTGTGTGTTTACAGTGTTTTGTAAAAAGTTT
TCGAAATTCTAACAAAGCTCTACAAAGCCTACTCCTCACGGCGTTGAACC
TATTCGCACCTTATGCAGATTTCTTACCACTGGACTAACTTTGAGACGCT
AAGATACGATTTTCTATACAGGAACATCGGAGCTGGATGGGTTAACATCA
ACCTTCCTCCCAAATATAATTTTCGCTGTTGAAGAATTATTCAAATGCTC
TTTTAACTTTCTGTTTACAATAGCCGCTCTTTATCACTTTCAAAGTCTTT
CAAAGTCTTTAAAATATAATTCTTCTAAGCCATTTACTTAATTGTGGTTA
AAAATTGCAATGCAATGTTATCTTTTTTCTCCTTACTTTCATAAAATGAA
ACTCGTATCATAGTTTCGGTAGCTATCTTTCTTCATTTATAGTTTTTTTA
TATATAGTGATTTGTGGATTGGGACACACAGCGTGCGACGCTGCGCATAC
GGCTAGTAGATTATATTATGAGGCTTAAACTGCGGTTTTAATCATGACGT
CTTAAGAAACACTTCGTGAGTGGCAAAATAACAGTTTAAACAATGCAGAA
GCTAGAATTAGATATTATGCCAAAACTACTGTAAAGTACTCGCATACATT
AAGGTAACAATCATTTCACGAAGTTTATGCATCCATATAATTTCCGTATA
ATTTTTGTAACTTTAGGGAACTTGCTGGCGTCAATGTTACTCAAACTCGA
AGACATGGTGTAGATTGTCAGACGAAGCCAGACGTGACAAATTCTTTTCT
TGTCAAAAAGATTCAGATTGTGCACATACCAGAGAAAGAGGATTGTTAGG
AAAATCTGCTAAGGAGGTTTGCGAAATGAGATATTCTGCTGGTGGCTCCG
GGCCAATATGTCATGGATCAATAAATCCTTAAATGTTGAAAGAGGAAGAA
AATTTACGGACAGTAGGAAACAAGTTTCTCCTTCGAATTATGTATTATAT
ACGATTTTATAACTTACACCGCAATAATTTTCTCGATTTTCCTTTGTTTG
ATTTTTAGTGCTTCTTTGTAATTTTTGAAAAATAACTTTTTTAAATAATT
TTTTTATTTTCTTCTAATAGTTTTCTAAGTATGGTTATTAGTTCCAGAAA
ATATAATTGTTGTGAGAAATAATATTTTTTCTTCTGTTGGTGCATTGGTT
TGCCTCCCTTTTAATTACTTTAATGGGATAAATTTTCGCGGGGATTAAAT
TTCGCGGTTGAGCTCATCCGCGAAATTTTAAGATTTCGCGGGGATTAAAT
TTCGCGGTTGAGCTCATCCGCGAAATTTTAAGATTTCGCGGGGATTAATT
TTCGCGGATGAGGGATTTTCTGATTTTTCGCGGGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041749-exon-sc0003001-1575043694:10352..10645 | TCONS_00041749-exon-sc0003001-1575043694:10352..10645 | Clytia hemisphaerica | exon |
| TCONS_00041749-exon-sc0003001-1575043694:9918..10169 | TCONS_00041749-exon-sc0003001-1575043694:9918..10169 | Clytia hemisphaerica | exon |
| TCONS_00041749-exon-sc0003001-1575043694:8309..8979 | TCONS_00041749-exon-sc0003001-1575043694:8309..8979 | Clytia hemisphaerica | exon |
| TCONS_00041749-exon-sc0003001-1510915933:10352..10645 | TCONS_00041749-exon-sc0003001-1510915933:10352..10645 | Clytia hemisphaerica | exon |
| TCONS_00041749-exon-sc0003001-1510915933:9918..10169 | TCONS_00041749-exon-sc0003001-1510915933:9918..10169 | Clytia hemisphaerica | exon |
| TCONS_00041749-exon-sc0003001-1510915933:8309..8979 | TCONS_00041749-exon-sc0003001-1510915933:8309..8979 | Clytia hemisphaerica | exon |
| TCONS_00041749-exon-sc0003001-1491911889:10352..10645 | TCONS_00041749-exon-sc0003001-1491911889:10352..10645 | Clytia hemisphaerica | exon |
| TCONS_00041749-exon-sc0003001-1491911889:9918..10169 | TCONS_00041749-exon-sc0003001-1491911889:9918..10169 | Clytia hemisphaerica | exon |
| TCONS_00041749-exon-sc0003001-1491911889:8309..8979 | TCONS_00041749-exon-sc0003001-1491911889:8309..8979 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003001 | supercontig | sc0003001:8309..10645 - |
Blast
The following BLAST results are available for this feature:
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