TCONS_00041748 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041748
Unique NameTCONS_00041748
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length925

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041748 ID=TCONS_00041748|Name=TCONS_00041748|organism=Clytia hemisphaerica|type=transcript|length=925bp
AAGCAATGGACATCAAAGTACTCATTTTATTCACCGCGGTTTTGGCGATT
GCTTATTCCTATCGCATAAGCAATGACGACTCTAACACAGGAAGGGATTT
CTACCAAGCACTACAAGATATGATTGATGAACGTGTGGCAGAAAAAATGG
ATCCTAAACATGAATGTAAATTTGGAGGTCTATGTAACAATGTTTACAGC
TACGGATGTCATAATTATATGAGGAAATGTGATGGTTCAGGATGCACAGA
AATTGGAACTTGCTGGCGTCAATGTTACTCAAACTCGAAGACATGGTGTA
GATTGTCAGACGAAGCCAGACGTGACAAATTCTTTTCTTGTCAAAAAGAT
TCAGATTGTGCACATACCAGAGAAAGAGGATTGTTAGGAAAATCTGCTAA
GGAGGTTTGCGAAATGAGATATTCTGCTGGTGGCTCCGGGCCAATATGTC
ATGGATCAATAAATCCTTAAATGTTGAAAGAGGAAGAAAATTTACGGACA
GTAGGAAACAAGTTTCTCCTTCGAATTATGTATTATATACGATTTTATAA
CTTACACCGCAATAATTTTCTCgattttcctttgtttgatttttagtgct
tctttgtaatttttgaaaaataacttttttaaataatttttttattttct
tctaatAGTTTTCTAAGTATGGTTATTAGTTCCAGAAAATATAATTGTTG
TgagaaataatattttttcttctgttGGTGCATTGGTTTGCCTCCCTttt
aattactttaatgggataaattttcgcggggattaaatttcgcggttgag
ctcatccgcgaaattttaagatttcgcggggattaaatttcgcggttgag
ctcatccgcgaaattttaagatttcgcggggattaattttcgcggatgag
ggattttctgatttttcgcggggat
Run BLAST on NCBI

protein sequence of TCONS_00041748-protein

>TCONS_00041748-protein ID=TCONS_00041748-protein|Name=TCONS_00041748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
AMDIKVLILFTAVLAIAYSYRISNDDSNTGRDFYQALQDMIDERVAEKMD
PKHECKFGGLCNNVYSYGCHNYMRKCDGSGCTEIGTCWRQCYSNSKTWCR
LSDEARRDKFFSCQKDSDCAHTRERGLLGKSAKEVCEMRYSAGGSGPICH
GSINP
Run BLAST on NCBI

transcript from alignment at sc0003001:8309..10349-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041748 ID=TCONS_00041748|Name=TCONS_00041748|organism=Clytia hemisphaerica|type=transcript|length=2041bp|location=Sequence derived from alignment at sc0003001:8309..10349- (Clytia hemisphaerica)
AAGTACACATTTATTAATTAATCAGATTTTTGAAAGAAATGACTTTTTCA
AAGTTTTCTCCCTACACTTTTTCAATAACTCCATAAGAAACCAATACTGA
ATCTGAGTGACGAGATATTGAAACAAATTTTATAGTTCAGCAAAATATAA
ACAACAATTTTTTTCTTGGTTTTTCTTTAGGCAATGGACATCAAAGTACT
CATTTTATTCACCGCGGTTTTGGCGATTGCTTATTCCTATCGCATAAGCA
ATGACGACTCTAACACAGGAAGGGATTTCTACCAAGCACTACAAGATATG
ATTGATGAACGTGTGGCAGAAAAAATGGATCCTAAACATGAATGTAAATT
TGGAGGTCTATGTAACAATGTTTACAGCTACGGATGTCATAATTATATGA
GGAAATGTGATGGTTCAGGATGCACAGAAATTGTAAGTAACATTTTGAAG
CATTTTGGTTTTGCAGCTCTCTGTGAATGTATTTTGACTACTTGATTGAA
CCACTTTTGTATTGTCACACGTATGTACATTTACGTTAACTGTGCCTGAA
AAACTATTCTTGTTTTTCGAAGCACCCTTCTCCCTGGGATTTCCCATATT
AATTTCCGCCCATCATTTAGCAAGATCGCACGGAAGAAAAGGGAAAGCAA
TCTATATATTAATACGCTAAAACGTGTGTGTTTACAGTGTTTTGTAAAAA
GTTTTCGAAATTCTAACAAAGCTCTACAAAGCCTACTCCTCACGGCGTTG
AACCTATTCGCACCTTATGCAGATTTCTTACCACTGGACTAACTTTGAGA
CGCTAAGATACGATTTTCTATACAGGAACATCGGAGCTGGATGGGTTAAC
ATCAACCTTCCTCCCAAATATAATTTTCGCTGTTGAAGAATTATTCAAAT
GCTCTTTTAACTTTCTGTTTACAATAGCCGCTCTTTATCACTTTCAAAGT
CTTTCAAAGTCTTTAAAATATAATTCTTCTAAGCCATTTACTTAATTGTG
GTTAAAAATTGCAATGCAATGTTATCTTTTTTCTCCTTACTTTCATAAAA
TGAAACTCGTATCATAGTTTCGGTAGCTATCTTTCTTCATTTATAGTTTT
TTTATATATAGTGATTTGTGGATTGGGACACACAGCGTGCGACGCTGCGC
ATACGGCTAGTAGATTATATTATGAGGCTTAAACTGCGGTTTTAATCATG
ACGTCTTAAGAAACACTTCGTGAGTGGCAAAATAACAGTTTAAACAATGC
AGAAGCTAGAATTAGATATTATGCCAAAACTACTGTAAAGTACTCGCATA
CATTAAGGTAACAATCATTTCACGAAGTTTATGCATCCATATAATTTCCG
TATAATTTTTGTAACTTTAGGGAACTTGCTGGCGTCAATGTTACTCAAAC
TCGAAGACATGGTGTAGATTGTCAGACGAAGCCAGACGTGACAAATTCTT
TTCTTGTCAAAAAGATTCAGATTGTGCACATACCAGAGAAAGAGGATTGT
TAGGAAAATCTGCTAAGGAGGTTTGCGAAATGAGATATTCTGCTGGTGGC
TCCGGGCCAATATGTCATGGATCAATAAATCCTTAAATGTTGAAAGAGGA
AGAAAATTTACGGACAGTAGGAAACAAGTTTCTCCTTCGAATTATGTATT
ATATACGATTTTATAACTTACACCGCAATAATTTTCTCGATTTTCCTTTG
TTTGATTTTTAGTGCTTCTTTGTAATTTTTGAAAAATAACTTTTTTAAAT
AATTTTTTTATTTTCTTCTAATAGTTTTCTAAGTATGGTTATTAGTTCCA
GAAAATATAATTGTTGTGAGAAATAATATTTTTTCTTCTGTTGGTGCATT
GGTTTGCCTCCCTTTTAATTACTTTAATGGGATAAATTTTCGCGGGGATT
AAATTTCGCGGTTGAGCTCATCCGCGAAATTTTAAGATTTCGCGGGGATT
AAATTTCGCGGTTGAGCTCATCCGCGAAATTTTAAGATTTCGCGGGGATT
AATTTTCGCGGATGAGGGATTTTCTGATTTTTCGCGGGGAT

Coding sequence (CDS) from alignment at sc0003001:8309..10349-

>TCONS_00041748 ID=TCONS_00041748|Name=TCONS_00041748|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at sc0003001:8309..10349- (Clytia hemisphaerica)
GGAACTTGCTGGCGTCAATGTTACTCAAACTCGAAGACATGGTGTAGATT
GTCAGACGAAGCCAGACGTGACAAATTCTTTTCTTGTCAAAAAGATTCAG
ATTGTGCACATACCAGAGAAAGAGGATTGTTAGGAAAATCTGCTAAGGAG
GTTTGCGAAATGAGATATTCTGCTGGTGGCTCCGGGCCAATATGTCATGG
ATCAATAAATCCTTAAGCAATGGACATCAAAGTACTCATTTTATTCACCG
CGGTTTTGGCGATTGCTTATTCCTATCGCATAAGCAATGACGACTCTAAC
ACAGGAAGGGATTTCTACCAAGCACTACAAGATATGATTGATGAACGTGT
GGCAGAAAAAATGGATCCTAAACATGAATGTAAATTTGGAGGTCTATGTA
ACAATGTTTACAGCTACGGATGTCATAATTATATGAGGAAATGTGATGGT
TCAGGATGCACAGAAATTGGAACTTGCTGGCGTCAATGTTACTCAAACTC
GAAGACATGGTGTAGATTGTCAGACGAAGCCAGACGTGACAAATTCTTTT
CTTGTCAAAAAGATTCAGATTGTGCACATACCAGAGAAAGAGGATTGTTA
GGAAAATCTGCTAAGGAGGTTTGCGAAATGAGATATTCTGCTGGTGGCTC
CGGGCCAATATGTCATGGATCAATAAATCCTTAAGCAATGGACATCAAAG
TACTCATTTTATTCACCGCGGTTTTGGCGATTGCTTATTCCTATCGCATA
AGCAATGACGACTCTAACACAGGAAGGGATTTCTACCAAGCACTACAAGA
TATGATTGATGAACGTGTGGCAGAAAAAATGGATCCTAAACATGAATGTA
AATTTGGAGGTCTATGTAACAATGTTTACAGCTACGGATGTCATAATTAT
ATGAGGAAATGTGATGGTTCAGGATGCACAGAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025662XLOC_025662Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041748-proteinTCONS_00041748-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041748-exon-sc0003001-1575043694:10348..10349TCONS_00041748-exon-sc0003001-1575043694:10348..10349Clytia hemisphaericaexon
TCONS_00041748-exon-sc0003001-1575043694:9918..10169TCONS_00041748-exon-sc0003001-1575043694:9918..10169Clytia hemisphaericaexon
TCONS_00041748-exon-sc0003001-1575043694:8309..8979TCONS_00041748-exon-sc0003001-1575043694:8309..8979Clytia hemisphaericaexon
TCONS_00041748-exon-sc0003001-1510915933:10348..10349TCONS_00041748-exon-sc0003001-1510915933:10348..10349Clytia hemisphaericaexon
TCONS_00041748-exon-sc0003001-1510915933:9918..10169TCONS_00041748-exon-sc0003001-1510915933:9918..10169Clytia hemisphaericaexon
TCONS_00041748-exon-sc0003001-1510915933:8309..8979TCONS_00041748-exon-sc0003001-1510915933:8309..8979Clytia hemisphaericaexon
TCONS_00041748-exon-sc0003001-1491911889:10348..10349TCONS_00041748-exon-sc0003001-1491911889:10348..10349Clytia hemisphaericaexon
TCONS_00041748-exon-sc0003001-1491911889:9918..10169TCONS_00041748-exon-sc0003001-1491911889:9918..10169Clytia hemisphaericaexon
TCONS_00041748-exon-sc0003001-1491911889:8309..8979TCONS_00041748-exon-sc0003001-1491911889:8309..8979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003001supercontigsc0003001:8309..10349 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1055.13	1110.77	805.457	530.897	7.67393e-06	0	789.164	0.00415106	5817.31	5249.99	3461.68	4231.3	0	0.773906	0	0	0	0	15.2185	0.647108	0	0	451.305	392.815	0	0	227.755	209.921	215.508	254.078
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041748 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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