TCONS_00041738 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041738
Unique NameTCONS_00041738
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1008

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041738 ID=TCONS_00041738|Name=TCONS_00041738|organism=Clytia hemisphaerica|type=transcript|length=1008bp
TCCAGATAAGTGCCTTTGTAGTGATCATATCATGAAATGATAATGCAAAT
TGATAATCGTTGGAGAAAGCAGAGCTCCTTTAAACACGTTTGTACGGAGA
CATTGACGCCGAAACAGTGATGCACGGAGGCATTGTCACGGAAGCATATC
TTTCACTTGGTTGCAATCATGGTAAACAGGCTTCCAATGAAGCGAGAAAT
GTCGTCAACATAAAACAGGAAAAAATACAATTGTTAAGGGAATTAGATGA
CAAAGAAGTTGTATTTATTTCAATAGGTTATTTCTTATTCTAACATATCG
ATGAACAAGGCTAAGGAATAAAATTTGGCAAAGCCATCAAAAACGCATTT
AGTGTTGGAATAATTTACAAAGAAAGGATCTAGTACTAAAAACATTCTTA
CAAAAGGTTCAAATTGAAGACCGTTTGACGTCAGTAATGGCCAATAGTAT
GACGAAGGCCACAAGGGAACAAGCAATATTCCTTTACCTTTACAGTTTCT
CAAGTGCTGAATAGTTTTACCTACTAGTGATATGGGAGGGCAAAGCCAAT
TAACCTCATTTTTTCCCCAATGACATGAAAATGCGTTGATTGCTGATGTC
CCTGGGCAGTATTCACGAGAGTTGAATCTAGGGGATTTTTTGTTTAGGTT
ATCTGCAAATCTGTCGATTGTAATTTGTCCATAGTTTTTAATAATGTAAT
CGAAAGTCTCGTTGTCAATGGACCAATTATCTGTGTCGAtcgattttgaa
attatatcgGCTGTTTCGTTTGACGCTCTAGGGATCCAATTAGGATAAAT
TTCGATATTGTGTAGTaaacaaatgttgaaaatatcgATTGCAATGTTTT
GTAAGTGTTGTTTTGTACTACCTCGATTAATAATTCTACATATATTGTCG
CTGTCTGTAAACCACTCCACTGTCTCGTTTTCGAGTAATTGAGGAAAAGA
TAGCAAAATGTATTTAACTGCCGTTAGCTCACGAAATGTCGAACTTGTTT
CCCTTTCG
Run BLAST on NCBI

transcript from alignment at sc0002994:27184..30140+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041738 ID=TCONS_00041738|Name=TCONS_00041738|organism=Clytia hemisphaerica|type=transcript|length=2957bp|location=Sequence derived from alignment at sc0002994:27184..30140+ (Clytia hemisphaerica)
TCCAGATAAGTGCATGAAATAGCAAACGAAATTGTTTGAATTTACATTAG
TTAACTTCTTTGAGTGAATGCAAGAGCGaggattttctcaattttttgaa
cAGAATATAAAGGCTGAATAGCGCATGCATCTCATTATTACATAATGACG
TGCATGCATAATTAAAATGCATTTCCGTGCAAAATTGTCGAGAACCTgtt
tttccagcttttttcaaTCGCTGGAAACTTTGCTTCTCGACTATTTTTCC
TTTTCGAAATGAacagaaaaatagaaaacaataaagttactttttcattg
gtattTGCTTACATTAAACACGagagagaaaaagaaagaggaaaaaacaa
CCATATTCTTTAAATATAATAAATGGGCATTTAAATTCCCAATGAACGTG
AAACTCTAAATCTAGTTTCGGCTTTGTCTTTTATGTAAGTGTTCCTGCTG
GTGTTTGAAGACCATCGACCATGTTTTGAGATAAGACGATCAGAAATACC
GTTGTTCGCAGCCTCTGATGCTCCTCCTGACCTCAAGGAATGTAAACCGT
ATATGGTAGGGTCGGTCATTTTTGAGATATGGTCTTTGAATGTGCTTATG
GCTGTCGTATAGGATATTGGGCGGTGGCTATGCACGTTGTGGCCTGTTTT
CGTCTTGTATAGATGGCAAATCAAGTATGCTTCtagtctggagaccatac
tctgtacaaaaaaatttctatcctgttaaaatcccaacaacttcactgaa
atacagagtatggaattattgactcgattcaaatcacttcaaatcacaaa
agaaaaaaccgttATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGC
TTTCAGCTTTTCGTTTCAAGTTTCTGTCCTTAATGTTCAGTAGTTTCTCT
CTCAACCCTGGCGCGTCGCCGTGATCTGttgggaaaaaagaaaatgaata
gtTTTTTGTTACCTTTGTAGTGATCATATCATGAAATGATAATGCAAATT
GATAATCGTTGGAGAAAGCAGAGCTCCTTTAAACACGTTTGTACGGAGAC
ATTGACGCCGAAACAGTGATGCACGGAGGCATTGTCACGGAAGCATATCT
TTCACTTGGTTGCAATCATGGTAAACAGGCTTCCAATGAAGCGAGAAATG
TCGTCAACATAAAACAGGAAAAAATACAATTGTTAAGGGAATTAGATGAC
AAAGAAGTTGTATTTATTTCAATAGGTTATTTCTTATTCTAACATATCGA
TGAACAAGGCTAAGGAATAAAATTTGGCAAAGCCATCAAAAACGCATTTA
GTGTTGGAATAATTTACAAAGAAAGGATCTAGTACTAAAAACATTCTTAC
AAAAGGTTCAAATTGAAGACCGTTTGACGTCAGTAATGGCCAATAGTATG
ACGAAGGCCACAAGGGAACAAGCAATATTCCTTTACCTTTACAGTTTCTC
AAGTGCTGAATAGTTTTACCTACTAGTGATATGGGAGGGCAAAGCCAATT
AACCTCATTTTTTCCCCAATGACATGAAAATGCGTTGATTGCTGATGTCC
CTGGGCAGTATTCACGAGAGTTGAATCTAGGGGATTTTTTGTTTAGGTTA
TCTGCAAATCTGTCGATTGTAATTTGTCCATAGTTTTTAATAATGTAATC
GAAAGTCTCGTTGTCAATGGACCAATTATCTGTGTCGAtcgattttgaaa
ttatatcgGCTGTTTCGTTTGACGCTCTAGGGATCCAATTAGGATAAATT
TCGATATTGTGTAGTaaacaaatgttgaaaatatcgATTGCAATGTTTTG
TAAGTGTTGTTTTGTACTACCTCGATTAATAATTCTACATATATTGTCGC
TGTCTGTAAACCACTCCACTGTCTCGTTTTCGAGTAATTGAGGAAAAGAT
AGCAAAATGTATTTAACTGCCGTTAGCTCACGAAATGTCGAACTTGTTTC
CCTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025655XLOC_025655Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041738-exon-sc0002994-1491911889:27184..27196TCONS_00041738-exon-sc0002994-1491911889:27184..27196Clytia hemisphaericaexon
TCONS_00041738-exon-sc0002994-1510915933:27184..27196TCONS_00041738-exon-sc0002994-1510915933:27184..27196Clytia hemisphaericaexon
TCONS_00041738-exon-sc0002994-1575043694:27184..27196TCONS_00041738-exon-sc0002994-1575043694:27184..27196Clytia hemisphaericaexon
TCONS_00041738-exon-sc0002994-1491911889:29146..30140TCONS_00041738-exon-sc0002994-1491911889:29146..30140Clytia hemisphaericaexon
TCONS_00041738-exon-sc0002994-1510915933:29146..30140TCONS_00041738-exon-sc0002994-1510915933:29146..30140Clytia hemisphaericaexon
TCONS_00041738-exon-sc0002994-1575043694:29146..30140TCONS_00041738-exon-sc0002994-1575043694:29146..30140Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002994supercontigsc0002994:27184..30140 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.796	2.66206	1.47367	0.374054	2.07004	1.0426	4.11245	2.19836	7.04949	5.49657	4.6929	9.57103	3.25697	6.34476	2.40372	2.90992	5.06465	6.59659	8.88469	9.33854	1.22969	0.90545	3.38815	4.90025	2.56585	1.39293	1.5459	1.31005	4.44304	4.43481
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008593Dam_MeTrfase
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0009007site-specific DNA-methyltransferase (adenine-specific) activity
GO:0003677DNA binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0032775DNA methylation on adenine
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032775 DNA methylation on adenine
molecular_function GO:0003677 DNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0009007 site-specific DNA-methyltransferase (adenine-specific) activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041738 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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