TCONS_00041733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041733
Unique NameTCONS_00041733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length516

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041733 ID=TCONS_00041733|Name=TCONS_00041733|organism=Clytia hemisphaerica|type=transcript|length=516bp
CGAAAGTCTTCCAACTTCTTTTCGAGCTTATTCTCGACATATTCTACAGT
ATGGAATCATCTGAGCTGGATCATCTGATAACTTCTTCTTTAGTTGTGAA
AGCTCTTCTTTTTGTGTTTCTACGATTTCGAGTAGATGATGTTCATTTGT
CTTTAGTTTCTTTATCGTATTCTCGTTTTCTTTGATTGTTTCTTTCAGTT
TCGATAGCTCTGCCGCTGTTTTTAAAGAAGGTTGAGATCTAGGGATCAAG
GCCAGCAAATCCTTTGACACCGACACACAGTTCTGACATACAAAGTTACA
ATGTATTCTTCGGTCGTCGTTAAAAGCAGTTATCATATACGCTGGTAGCC
TCGAACATAGATAGTGAACTAGTCTGTTACATTTTGAACATGCCAGGGTG
TCCTCATTCTTGTCATCTGCACATGCGTTGCCGGTACAAAGCAGGTTAGG
TGTGTTTCTTTGTCGGTTGGACGTCATTTGTGATGTATCAGGATGCTGGT
AGAGTGTTTGATGGTG
Run BLAST on NCBI

protein sequence of TCONS_00041733-protein

>TCONS_00041733-protein ID=TCONS_00041733-protein|Name=TCONS_00041733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
HHQTLYQHPDTSQMTSNRQRNTPNLLCTGNACADDKNEDTLACSKCNRLV
HYLCSRLPAYMITAFNDDRRIHCNFVCQNCVSVSKDLLALIPRSQPSLKT
AAELSKLKETIKENENTIKKLKTNEHHLLEIVETQKEELSQLKKKLSDDP
AQMIPYCRICRE
Run BLAST on NCBI

transcript from alignment at sc0002992:14663..15178

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041733 ID=TCONS_00041733|Name=TCONS_00041733|organism=Clytia hemisphaerica|type=transcript|length=516bp|location=Sequence derived from alignment at sc0002992:14663..15178 (Clytia hemisphaerica)
CACCATCAAACACTCTACCAGCATCCTGATACATCACAAATGACGTCCAA
CCGACAAAGAAACACACCTAACCTGCTTTGTACCGGCAACGCATGTGCAG
ATGACAAGAATGAGGACACCCTGGCATGTTCAAAATGTAACAGACTAGTT
CACTATCTATGTTCGAGGCTACCAGCGTATATGATAACTGCTTTTAACGA
CGACCGAAGAATACATTGTAACTTTGTATGTCAGAACTGTGTGTCGGTGT
CAAAGGATTTGCTGGCCTTGATCCCTAGATCTCAACCTTCTTTAAAAACA
GCGGCAGAGCTATCGAAACTGAAAGAAACAATCAAAGAAAACGAGAATAC
GATAAAGAAACTAAAGACAAATGAACATCATCTACTCGAAATCGTAGAAA
CACAAAAAGAAGAGCTTTCACAACTAAAGAAGAAGTTATCAGATGATCCA
GCTCAGATGATTCCATACTGTAGAATATGTCGAGAATAAGCTCGAAAAGA
AGTTGGAAGACTTTCG

Coding sequence (CDS) from alignment at sc0002992:14663..15178

>TCONS_00041733 ID=TCONS_00041733|Name=TCONS_00041733|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at sc0002992:14663..15178 (Clytia hemisphaerica)
CACCATCAAACACTCTACCAGCATCCTGATACATCACAAATGACGTCCAA
CCGACAAAGAAACACACCTAACCTGCTTTGTACCGGCAACGCATGTGCAG
ATGACAAGAATGAGGACACCCTGGCATGTTCAAAATGTAACAGACTAGTT
CACTATCTATGTTCGAGGCTACCAGCGTATATGATAACTGCTTTTAACGA
CGACCGAAGAATACATTGTAACTTTGTATGTCAGAACTGTGTGTCGGTGT
CAAAGGATTTGCTGGCCTTGATCCCTAGATCTCAACCTTCTTTAAAAACA
GCGGCAGAGCTATCGAAACTGAAAGAAACAATCAAAGAAAACGAGAATAC
GATAAAGAAACTAAAGACAAATGAACATCATCTACTCGAAATCGTAGAAA
CACAAAAAGAAGAGCTTTCACAACTAAAGAAGAAGTTATCAGATGATCCA
GCTCAGATGATTCCATACTGTAGAATATGTCGAGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025650XLOC_025650Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041733-exon-sc0002992-1491911889:14663..15178TCONS_00041733-exon-sc0002992-1491911889:14663..15178Clytia hemisphaericaexon
TCONS_00041733-exon-sc0002992-1510915933:14663..15178TCONS_00041733-exon-sc0002992-1510915933:14663..15178Clytia hemisphaericaexon
TCONS_00041733-exon-sc0002992-1575043694:14663..15178TCONS_00041733-exon-sc0002992-1575043694:14663..15178Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041733-proteinTCONS_00041733-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002992supercontigsc0002992:14663..15178 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.08013	2.25384	2.09354	3.58435	0.779214	1.23149	1.18859	1.11275	0.292147	0.482496	0.702483	0.846605	0.614857	1.4367	0.196861	0.352103	0	0.0889185	0.737074	0.257098	0.44693	0.653991	0.132502	0.36139	0.496298	0.664401	0.316919	1.01467	0.256531	0.784094
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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