TCONS_00041729 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041729
Unique NameTCONS_00041729
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length681

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041729 ID=TCONS_00041729|Name=TCONS_00041729|organism=Clytia hemisphaerica|type=transcript|length=681bp
NNTTAATATAAGATCATGTTGTTCAAGGAGCTGACTCAGACAAGATCTTC
CACTTCTAAAGCCATGCTGATTTGGGTTGAAAAGGTTATTTTCGTCCATG
TGTTTGACAATGTGTTTTCTGATGACTTTCTCAAAGATCTTTATAACGTG
TGATGATAAGGCGACTGGTCGGTAGTTTGCAGCCAGTGATTTGTTTCCTC
CTTTGTAGATTGGGGTTatagttgtttttttcaatttgtttggAACAATT
CCTTTTCCCAGACTGTTTTTCCATAGATGGCACAATGGGATGGCTAATTC
TTCTTTACATTGTTTCAGGACTATTGCTGGGAAACCATCTGGACCAGCAG
CTAAGGATGGTGATAATTCGTCAATGGCTTTCATTATGTCATTTTCAGTG
ACTACCATTTCTGATAATTCAGTGGTTTGTGTGTGCTTTGGCACTTGGTA
CCTAGGTTGCATGATTTTAAATGTGTTATATGAAAAAAGGCATGTTGGTA
TTACTCCTGACTgtatgaggatttaatatcatcgaactaattgaactttt
tactgaccaaactaatcgaactgctattgcttcaaaaattgtgagtgttc
ggttaggtttgactatttttggtcagcctaagctgagcattcaaataggt
aaaattttccagttcctccataagacggcaa
Run BLAST on NCBI

protein sequence of TCONS_00041729-protein

>TCONS_00041729-protein ID=TCONS_00041729-protein|Name=TCONS_00041729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MQPRYQVPKHTQTTELSEMVVTENDIMKAIDELSPSLAAGPDGFPAIVLK
QCKEELAIPLCHLWKNSLGKGIVPNKLKKTTITPIYKGGNKSLAANYRPV
ALSSHVIKIFEKVIRKHIVKHMDENNLFNPNQHGFRSGRSCLSQLLEQHD
LILX
Run BLAST on NCBI

transcript from alignment at sc0002990:4693..5373

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041729 ID=TCONS_00041729|Name=TCONS_00041729|organism=Clytia hemisphaerica|type=transcript|length=681bp|location=Sequence derived from alignment at sc0002990:4693..5373 (Clytia hemisphaerica)
ttgccgtcttatggaggaactggaaaattttacctatttgaatgctcagc
ttaggctgaccaaaaatagtcaaacctaaccgaacactcacaatttttga
agcaatagcagttcgattagtttggtcagtaaaaagttcaattagttcga
tgatattaaatcctcatacAGTCAGGAGTAATACCAACATGCCTTTTTTC
ATATAACACATTTAAAATCATGCAACCTAGGTACCAAGTGCCAAAGCACA
CACAAACCACTGAATTATCAGAAATGGTAGTCACTGAAAATGACATAATG
AAAGCCATTGACGAATTATCACCATCCTTAGCTGCTGGTCCAGATGGTTT
CCCAGCAATAGTCCTGAAACAATGTAAAGAAGAATTAGCCATCCCATTGT
GCCATCTATGGAAAAACAGTCTGGGAAAAGGAATTGTTccaaacaaattg
aaaaaaacaactatAACCCCAATCTACAAAGGAGGAAACAAATCACTGGC
TGCAAACTACCGACCAGTCGCCTTATCATCACACGTTATAAAGATCTTTG
AGAAAGTCATCAGAAAACACATTGTCAAACACATGGACGAAAATAACCTT
TTCAACCCAAATCAGCATGGCTTTAGAAGTGGAAGATCTTGTCTGAGTCA
GCTCCTTGAACAACATGATCTTATATTAANN

Coding sequence (CDS) from alignment at sc0002990:4693..5373

>TCONS_00041729 ID=TCONS_00041729|Name=TCONS_00041729|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at sc0002990:4693..5373 (Clytia hemisphaerica)
ATGCAACCTAGGTACCAAGTGCCAAAGCACACACAAACCACTGAATTATC
AGAAATGGTAGTCACTGAAAATGACATAATGAAAGCCATTGACGAATTAT
CACCATCCTTAGCTGCTGGTCCAGATGGTTTCCCAGCAATAGTCCTGAAA
CAATGTAAAGAAGAATTAGCCATCCCATTGTGCCATCTATGGAAAAACAG
TCTGGGAAAAGGAATTGTTccaaacaaattgaaaaaaacaactatAACCC
CAATCTACAAAGGAGGAAACAAATCACTGGCTGCAAACTACCGACCAGTC
GCCTTATCATCACACGTTATAAAGATCTTTGAGAAAGTCATCAGAAAACA
CATTGTCAAACACATGGACGAAAATAACCTTTTCAACCCAAATCAGCATG
GCTTTAGAAGTGGAAGATCTTGTCTGAGTCAGCTCCTTGAACAACATGAT
CTTATATTAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025646XLOC_025646Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041729-exon-sc0002990-1491911889:4693..5373TCONS_00041729-exon-sc0002990-1491911889:4693..5373Clytia hemisphaericaexon
TCONS_00041729-exon-sc0002990-1510915933:4693..5373TCONS_00041729-exon-sc0002990-1510915933:4693..5373Clytia hemisphaericaexon
TCONS_00041729-exon-sc0002990-1575043694:4693..5373TCONS_00041729-exon-sc0002990-1575043694:4693..5373Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041729-proteinTCONS_00041729-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002990supercontigsc0002990:4693..5373 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06058	1.18567	2.66486	2.81339	1.68125	1.38475	0.828783	0.61172	0.750756	0.804758	0.898745	0.622523	0.78545	1.11201	0.609847	0.894099	0.684634	0.42976	0.407973	0.613458	0.950072	0.565191	0.096496	0.615795	0.707691	0.887098	1.20924	1.37306	0.49807	1.27327
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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