TCONS_00041728 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041728
Unique NameTCONS_00041728
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041728 ID=TCONS_00041728|Name=TCONS_00041728|organism=Clytia hemisphaerica|type=transcript|length=284bp
NNGGATCTCTTCAAGTCTTTGAATAAGACTAATAGTACTGGGGCTCCATA
ACGCTGAGCAATATTCCAGTATAGGGATCACAAGTGATTTATAGAGAGTG
ATCATAGTATGTGTAGAGCGGGAAGTGAAGCATTCTTTATTGACTTGGTT
GTGCAAGTGTCATCTGCAAAGGACTTGACGATAGATTGGATAACATTCTT
ATCTATGTCTCCAATGAGTATCAGGAAAATCAGGGGTCCAAGTACACTTC
CTTGTGGAACACCTGAGATAACTTCTTGGTTGTT
Run BLAST on NCBI

transcript from alignment at sc0002990:5524..6211-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041728 ID=TCONS_00041728|Name=TCONS_00041728|organism=Clytia hemisphaerica|type=transcript|length=688bp|location=Sequence derived from alignment at sc0002990:5524..6211- (Clytia hemisphaerica)
NNGGATCTCTTCAAGTCTTTGAATAAGACTAATAGTACTGGGGCTCCATA
ACGCTGAGCAATATTCCAGTATAGGGATCACAAGTGATTTATAGAGAGTG
ATCATAGTATGTGTAGAGCGGGAAGTGAAGGTACGTAATATCCAAGAAAT
GTTGTTTTTGGCTTTTTCAATTATTGATTCAATTTGGTGTTTAAATAGAC
AATCATTGGACATAAGAACTCCCAGGTCTTTAACATATTCCTTTCCTTCA
ATTTTATCTCCTGATGGTGAGGTATAGTGAGATTCATTTTTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAACGTAGCAATTCAAATT
TTGCATCATTCAATTTCATATTGTTTGCGATTGTCCATTGATATAAAATC
TGAAGGTCTTGTTGCAATATTTTTACATCTCAAGCATTCTTTATTGACTT
GGTTGTGCAAGTGTCATCTGCAAAGGACTTGACGATAGATTGGATAACAT
TCTTATCTATGTCTCCAATGAGTATCAGGAAAATCAGGGGTCCAAGTACA
CTTCCTTGTGGAACACCTGAGATAACTTCTTGGTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025645XLOC_025645Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041728-exon-sc0002990-1575043694:6082..6211TCONS_00041728-exon-sc0002990-1575043694:6082..6211Clytia hemisphaericaexon
TCONS_00041728-exon-sc0002990-1575043694:5524..5677TCONS_00041728-exon-sc0002990-1575043694:5524..5677Clytia hemisphaericaexon
TCONS_00041728-exon-sc0002990-1510915933:6082..6211TCONS_00041728-exon-sc0002990-1510915933:6082..6211Clytia hemisphaericaexon
TCONS_00041728-exon-sc0002990-1510915933:5524..5677TCONS_00041728-exon-sc0002990-1510915933:5524..5677Clytia hemisphaericaexon
TCONS_00041728-exon-sc0002990-1491911889:6082..6211TCONS_00041728-exon-sc0002990-1491911889:6082..6211Clytia hemisphaericaexon
TCONS_00041728-exon-sc0002990-1491911889:5524..5677TCONS_00041728-exon-sc0002990-1491911889:5524..5677Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002990supercontigsc0002990:5524..6211 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.57556	2.48267	3.89743	8.98522	2.53304	1.2028	1.81117	2.82599	2.34119	2.94089	1.57136	0.938219	1.24922	3.36921	2.24066	0.431262	1.17831	0	0	0	1.36896	2.79593	2.02063	0	0	0.44996	0.643891	3.30011	1.25277	2.79438
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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