TCONS_00041725 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041725
Unique NameTCONS_00041725
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length719

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041725 ID=TCONS_00041725|Name=TCONS_00041725|organism=Clytia hemisphaerica|type=transcript|length=719bp
CGAGATTTGTTGAAGTTATTTTGTCATATATATGCCGTCTGTTGTTTCTC
TATTTCGTCTAAATCCTTGCTGCTGGTCGAACAGTTGTTCGTCATACCAG
TCTTTAAGTCTAGTCAAGATTATTATCACCATTATCTTACAAAGACTTGA
TCCTAGTTGTAAACCTCTGTACGATGTCGGGTCTTTTGCAATTCCTTTAG
CTGCTCCTTTCCATAAGGCAATAAGCTTTGAATGACCCCATGATGATGGT
ATGGATTTCGTCGTCCATATTTGAAGAAGTAGCGATTCAAGCTCTGATAG
TAGCGCGTTTGATGCGACTGcatacttgaagaattttgTAGGAAGATCGT
TTTGAGGATTTACCATTGTTTAAAGATTTGAGGGTAGATacaatttcgtt
cttttttggaGGGTCAAAATTGATGAACTCGCGGGTAATTTGTTGCAATA
GAGCAATATAATTTGGTATATTAATAAGTTCAATGggtttcattttatta
tttacgTTGCCAgtgaaatgtttttcaaaatatgttttcaatGTCTCTGG
GTCActcgcaaatttttgtcccaTATATTTGAATGTTGAACCGTCGGACT
TAATGGTTTTGAAGAGCTCTTCAACTTGTCGTTTTGTTGCAAACTCGTTT
ATTTCGTCAGCTTCTTCTTGCATCGTGAGATTTCTCAATTgccgtacacg
ttttttaattctctttaag
Run BLAST on NCBI

protein sequence of TCONS_00041725-protein

>TCONS_00041725-protein ID=TCONS_00041725-protein|Name=TCONS_00041725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
LKRIKKRVRQLRNLTMQEEADEINEFATKRQVEELFKTIKSDGSTFKYMG
QKFASDPETLKTYFEKHFTGNVNNKMKPIELINIPNYIALLQQITREFIN
FDPPKKNEIVSTLKSLNNGKSSKRSSYKILQVCSRIKRATIRA
Run BLAST on NCBI

transcript from alignment at sc0002988:14410..15128

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041725 ID=TCONS_00041725|Name=TCONS_00041725|organism=Clytia hemisphaerica|type=transcript|length=719bp|location=Sequence derived from alignment at sc0002988:14410..15128 (Clytia hemisphaerica)
cttaaagagaattaaaaaacgtgtacggcAATTGAGAAATCTCACGATGC
AAGAAGAAGCTGACGAAATAAACGAGTTTGCAACAAAACGACAAGTTGAA
GAGCTCTTCAAAACCATTAAGTCCGACGGTTCAACATTCAAATATAtggg
acaaaaatttgcgagTGACCCAGAGACattgaaaacatattttgaaaaac
atttcacTGGCAAcgtaaataataaaatgaaaccCATTGAACTTATTAAT
ATACCAAATTATATTGCTCTATTGCAACAAATTACCCGCGAGTTCATCAA
TTTTGACCCtccaaaaaagaacgaaattgtATCTACCCTCAAATCTTTAA
ACAATGGTAAATCCTCAAAACGATCTTCCTAcaaaattcttcaagtatgC
AGTCGCATCAAACGCGCTACTATCAGAGCTTGAATCGCTACTTCTTCAAA
TATGGACGACGAAATCCATACCATCATCATGGGGTCATTCAAAGCTTATT
GCCTTATGGAAAGGAGCAGCTAAAGGAATTGCAAAAGACCCGACATCGTA
CAGAGGTTTACAACTAGGATCAAGTCTTTGTAAGATAATGGTGATAATAA
TCTTGACTAGACTTAAAGACTGGTATGACGAACAACTGTTCGACCAGCAG
CAAGGATTTAGACGAAATAGAGAAACAACAGACGGCATATATATGACAAA
ATAACTTCAACAAATCTCG

Coding sequence (CDS) from alignment at sc0002988:14410..15128

>TCONS_00041725 ID=TCONS_00041725|Name=TCONS_00041725|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at sc0002988:14410..15128 (Clytia hemisphaerica)
ttaaagagaattaaaaaacgtgtacggcAATTGAGAAATCTCACGATGCA
AGAAGAAGCTGACGAAATAAACGAGTTTGCAACAAAACGACAAGTTGAAG
AGCTCTTCAAAACCATTAAGTCCGACGGTTCAACATTCAAATATAtggga
caaaaatttgcgagTGACCCAGAGACattgaaaacatattttgaaaaaca
tttcacTGGCAAcgtaaataataaaatgaaaccCATTGAACTTATTAATA
TACCAAATTATATTGCTCTATTGCAACAAATTACCCGCGAGTTCATCAAT
TTTGACCCtccaaaaaagaacgaaattgtATCTACCCTCAAATCTTTAAA
CAATGGTAAATCCTCAAAACGATCTTCCTAcaaaattcttcaagtatgCA
GTCGCATCAAACGCGCTACTATCAGAGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025642XLOC_025642Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041725-proteinTCONS_00041725-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041725-exon-sc0002988-1491911889:14410..15128TCONS_00041725-exon-sc0002988-1491911889:14410..15128Clytia hemisphaericaexon
TCONS_00041725-exon-sc0002988-1510915933:14410..15128TCONS_00041725-exon-sc0002988-1510915933:14410..15128Clytia hemisphaericaexon
TCONS_00041725-exon-sc0002988-1575043694:14410..15128TCONS_00041725-exon-sc0002988-1575043694:14410..15128Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002988supercontigsc0002988:14410..15128 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.364061	0.542688	0.580065	0.462351	0.187622	0.222393	0.0894358	0.334915	0.0586204	0.127639	0.634301	0.185317	0.231325	0.528513	0.158003	0.254343	0.208886	0.321153	0.221845	0	0.269034	0.0984192	0	0	0.37344	0.333286	1.24002	1.01799	0.365191	0.629325
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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