TCONS_00041724 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041724
Unique NameTCONS_00041724
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041724 ID=TCONS_00041724|Name=TCONS_00041724|organism=Clytia hemisphaerica|type=transcript|length=442bp
NNCAAACATAAACCAAAAAGCTTGGATACAGTGTGAAGTGGATATCAAAA
GTGGATATACATATGAATTCGTTTTCAATACTGACAGAGCTGATGACTCC
AAAATCATTGTTCGACTTCCGCGCAATCATCATCATACAAGTAGGAAAGG
AGAAACATTAGTCTACGCTCATAATTGTGGAAGGCCTTCCAATATACACG
CATTCGAAGTTTCGGACGAGAATGGAATCACAGATGACGATACATGTATC
ACAATCAGCACCGGTCCTTCAGTTGCCAAAACTGTCAAAGAATTCAATCA
AAGAGCAATGCAGTATTACAAAGACCATATCGGCACCAAAACCTTCCCAC
CCTCGTATTACGTACGAAATGTAAACATGAAAGAAGTTATCGCCAGTCTT
GAAGAACATTCATCGCTTCTTGGAGGAAAAATTCTCGTCGNN
Run BLAST on NCBI

protein sequence of TCONS_00041724-protein

>TCONS_00041724-protein ID=TCONS_00041724-protein|Name=TCONS_00041724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
XNINQKAWIQCEVDIKSGYTYEFVFNTDRADDSKIIVRLPRNHHHTSRKG
ETLVYAHNCGRPSNIHAFEVSDENGITDDDTCITISTGPSVAKTVKEFNQ
RAMQYYKDHIGTKTFPPSYYVRNVNMKEVIASLEEHSSLLGGKILVX
Run BLAST on NCBI

transcript from alignment at sc0002988:7891..8513-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041724 ID=TCONS_00041724|Name=TCONS_00041724|organism=Clytia hemisphaerica|type=transcript|length=623bp|location=Sequence derived from alignment at sc0002988:7891..8513- (Clytia hemisphaerica)
NNCAAACATAAACCAAAAAGCTTGGATACAGTGTGAAGTGGATATCAAAA
GTGGATATACATATGAATTCGTTTTCAATACTGACAGAGCTGATGACTCC
AAAATCATTGTTCGACTTCCGCGTAAGACTTGTCTGGAAAATTTATCAAG
GGAAAATTATTTTGAAGATTAGGGGCTAGATACTTTTTGATATTCTCGTA
ATACTATCAATTGAAAAAAATTTAAAGGAAATATTGATATGACTTTAACT
ATTTATGGGATCTGATTTTATTGTAACTTTAGGAAACTCTCATTTCTTTC
CAGGCAATCATCATCATACAAGTAGGAAAGGAGAAACATTAGTCTACGCT
CATAATTGTGGAAGGCCTTCCAATATACACGCATTCGAAGTTTCGGACGA
GAATGGAATCACAGATGACGATACATGTATCACAATCAGCACCGGTCCTT
CAGTTGCCAAAACTGTCAAAGAATTCAATCAAAGAGCAATGCAGTATTAC
AAAGACCATATCGGCACCAAAACCTTCCCACCCTCGTATTACGTACGAAA
TGTAAACATGAAAGAAGTTATCGCCAGTCTTGAAGAACATTCATCGCTTC
TTGGAGGAAAAATTCTCGTCGNN

Coding sequence (CDS) from alignment at sc0002988:7891..8513-

>TCONS_00041724 ID=TCONS_00041724|Name=TCONS_00041724|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at sc0002988:7891..8513- (Clytia hemisphaerica)
GCAATCATCATCATACAAGTAGGAAAGGAGAAACATTAGTCTACGCTCAT
AATTGTGGAAGGCCTTCCAATATACACGCATTCGAAGTTTCGGACGAGAA
TGGAATCACAGATGACGATACATGTATCACAATCAGCACCGGTCCTTCAG
TTGCCAAAACTGTCAAAGAATTCAATCAAAGAGCAATGCAGTATTACAAA
GACCATATCGGCACCAAAACCTTCCCACCCTCGTATTACGTACGAAATGT
AAACATGAAAGAAGTTATCGCCAGTCTTGAAGAACATTCATCGCTTCTTG
GAGGAAAAATTCTCGTCGNNNCAAACATAAACCAAAAAGCTTGGATACAG
TGTGAAGTGGATATCAAAAGTGGATATACATATGAATTCGTTTTCAATAC
TGACAGAGCTGATGACTCCAAAATCATTGTTCGACTTCCGCGCAATCATC
ATCATACAAGTAGGAAAGGAGAAACATTAGTCTACGCTCATAATTGTGGA
AGGCCTTCCAATATACACGCATTCGAAGTTTCGGACGAGAATGGAATCAC
AGATGACGATACATGTATCACAATCAGCACCGGTCCTTCAGTTGCCAAAA
CTGTCAAAGAATTCAATCAAAGAGCAATGCAGTATTACAAAGACCATATC
GGCACCAAAACCTTCCCACCCTCGTATTACGTACGAAATGTAAACATGAA
AGAAGTTATCGCCAGTCTTGAAGAACATTCATCGCTTCTTGGAGGAAAAA
TTCTCGTCGNNNCAAACATAAACCAAAAAGCTTGGATACAGTGTGAAGTG
GATATCAAAAGTGGATATACATATGAATTCGTTTTCAATACTGACAGAGC
TGATGACTCCAAAATCATTGTTCGACTTCCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025641XLOC_025641Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041724-proteinTCONS_00041724-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041724-exon-sc0002988-1575043694:8392..8513TCONS_00041724-exon-sc0002988-1575043694:8392..8513Clytia hemisphaericaexon
TCONS_00041724-exon-sc0002988-1575043694:7891..8210TCONS_00041724-exon-sc0002988-1575043694:7891..8210Clytia hemisphaericaexon
TCONS_00041724-exon-sc0002988-1510915933:8392..8513TCONS_00041724-exon-sc0002988-1510915933:8392..8513Clytia hemisphaericaexon
TCONS_00041724-exon-sc0002988-1510915933:7891..8210TCONS_00041724-exon-sc0002988-1510915933:7891..8210Clytia hemisphaericaexon
TCONS_00041724-exon-sc0002988-1491911889:8392..8513TCONS_00041724-exon-sc0002988-1491911889:8392..8513Clytia hemisphaericaexon
TCONS_00041724-exon-sc0002988-1491911889:7891..8210TCONS_00041724-exon-sc0002988-1491911889:7891..8210Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002988supercontigsc0002988:7891..8513 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.73785	1.10716	0.538461	0	2.7505	3.19076	5.27923	7.1427	7.98958	9.26332	15.7137	6.57963	22.7086	26.3758	14.2182	18.8571	16.1214	17.4873	36.9079	35.5745	19.3025	18.685	7.54632	14.3617	16.1659	13.9211	53.9184	45.0805	30.7263	27.6358
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041724 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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