TCONS_00041723 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041723
Unique NameTCONS_00041723
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041723 ID=TCONS_00041723|Name=TCONS_00041723|organism=Clytia hemisphaerica|type=transcript|length=312bp
AAAGGACGGCtcaaaacaaacagaaattATTTCACAGAAATTGACCGATT
TCAGTTTCGACGTTTCACAATCTCTAgatgattttaacaaaaatgaagAG
CTACGGCAAAACTATTTCAGgATGGCGTTTACTCTTTCAACTTCCATTTC
ATCTTTGGGAACGTAAGTCAATACAGTTGATGTCCTCTGATTCAGCATTG
TCAATCAACTNNNNNNNNNNNNNNNNNNNNNNNNNNGGATGGCGTTTACT
CTTTCAACTTCCATTTCATCTTTGGGAACGTAAGTCAATACAGTTGATGT
CCTCTGATTCAG
Run BLAST on NCBI

transcript from alignment at sc0002988:4615..5087-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041723 ID=TCONS_00041723|Name=TCONS_00041723|organism=Clytia hemisphaerica|type=transcript|length=473bp|location=Sequence derived from alignment at sc0002988:4615..5087- (Clytia hemisphaerica)
AAAGGACGGCTCAAAACAAACAGAAATTATTTCACAGAAATTGACCGATT
TCAGTTTCGACGTTTCACAATCTCTAGATGATTTTAACAAAAATGAAGAG
CTACGGCAAAACTATTTCAGGTATAATCTTTCTTTTGAAATTTTCAAGTA
TTAATGATCTTTATTATTGCAAAAAGCTCAATGAGAGGATATCAGTCATA
TTTTCCAAAATTAGGTGCCCGCTAATCCTTTAACCAAATAAATTCCAGAC
AAAAAAGAAATACATAATTTTTTTCCTTCAGGATGGCGTTTACTCTTTCA
ACTTCCATTTCATCTTTGGGAACGTAAGTCAATACAGTTGATGTCCTCTG
ATTCAGCATTGTCAATCAACTNNNNNNNNNNNNNNNNNNNNNNNNNNGGA
TGGCGTTTACTCTTTCAACTTCCATTTCATCTTTGGGAACGTAAGTCAAT
ACAGTTGATGTCCTCTGATTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025640XLOC_025640Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041723-exon-sc0002988-1575043694:4968..5087TCONS_00041723-exon-sc0002988-1575043694:4968..5087Clytia hemisphaericaexon
TCONS_00041723-exon-sc0002988-1575043694:4615..4806TCONS_00041723-exon-sc0002988-1575043694:4615..4806Clytia hemisphaericaexon
TCONS_00041723-exon-sc0002988-1510915933:4968..5087TCONS_00041723-exon-sc0002988-1510915933:4968..5087Clytia hemisphaericaexon
TCONS_00041723-exon-sc0002988-1510915933:4615..4806TCONS_00041723-exon-sc0002988-1510915933:4615..4806Clytia hemisphaericaexon
TCONS_00041723-exon-sc0002988-1491911889:4968..5087TCONS_00041723-exon-sc0002988-1491911889:4968..5087Clytia hemisphaericaexon
TCONS_00041723-exon-sc0002988-1491911889:4615..4806TCONS_00041723-exon-sc0002988-1491911889:4615..4806Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002988supercontigsc0002988:4615..5087 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.464345	0	0	0	0	0	1.19973	0	3.55993	0.897588	0	1.23155	0.972234	3.12059	1.71818	1.62738	0.822509	2.11101	0	1.78673	0	0.659877	14.597	16.0035	8.19021	10.163
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041723 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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