TCONS_00041720 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041720
Unique NameTCONS_00041720
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length719

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041720 ID=TCONS_00041720|Name=TCONS_00041720|organism=Clytia hemisphaerica|type=transcript|length=719bp
GTTTCAGTTGTAAGACAAATCAATACTTGTTTTTGGTACTGAAGTTTTAA
AATGTCTGATAACAATAGTGGCAAgaatgatttgaaaagaaagcgCATTG
GTAAAAATGGACCTTACGAGAAATCGCTCGCTTACATTACAGATGGCAGA
ATGCGTCGAGCTAAAGAGAAAGCCAAGCTTGGGCAGTTGGAAAAAGTTgt
TTATGAAATATCTCTGCTGACAAAGACACCAGTTGCTGTTATGGCCCTCA
ACTCCTACTCCCAGATTTGGATTGCAGGTACGACTGACAAAATGACTGAG
TTTGTGAGTAACGAGGAACTCCAAAGCAAGTTTGAAATGGCGGCGAAAGG
TGATTCTGAACCGTACTATAATTTTCaaagctttgtttcAAGCATCGGAT
CTCCCTGTTTCCTCCGAACAGTGGGCTGAGCTGAATTGGGAAGACTTTGA
TTTCCCGAAAAACTGGCTTGCAAAGAATTGGTCACCGCCAAAAACTCCAA
TTAAAAAGAATCTAGTATCTCTAAGGCACCGTTGTTTAGTAGCCGATACA
GATCTGGAGCCTGTTCGACTTCTTACATCAGCAGAATGCATTTCGTTTGC
ATTATTTCATGATAAGAAATTTTGGCCTTTCATAAAGCTGGTTACCATAA
CGAGTTGCTTGTCACATATTGACGTTCTGGTCGAATGGGTTAGTTAAGtc
taataattatttttcaaaa
Run BLAST on NCBI

transcript from alignment at sc0002986:6207..10626+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041720 ID=TCONS_00041720|Name=TCONS_00041720|organism=Clytia hemisphaerica|type=transcript|length=4420bp|location=Sequence derived from alignment at sc0002986:6207..10626+ (Clytia hemisphaerica)
GTTTCAGTTGTAAGACAAATCAATACTTGTTTTTGGTACTGAAGTTTTAA
AATGTCTGATAACAATAGTGGCAAgaatgatttgaaaagaaagcgCATTG
GTAAAAATGGACCTTACGAGAAATCGGTAAAAAGCTTATTTCAATTTTAA
GTTAATCTTTTCTGATGGAGCGTGAAATTGTCTAgtaattttctgtaaaa
acTTATTAATAATTGTCATTTTTCAGCTCGCTTACATTACAGATGGCAGA
ATGCGTCGAGCTAAAGAGAAAGCCAAGCTTGGGCAGTTGGAAAAAGTTGT
AAGTTTTTTGCTTTCAACAATTACAATTTTAATAGGATGTTATTCTTTTT
GTTGAAGGAATAGTTAGGGTAATAGTGAAAAAGATTTTACACAAggaggt
tttgattttttaggtTTATGAAATATCTCTGCTGACAAAGACACCAGTTG
CTGTTATGGCCCTCAACTCCTACTCCCAGATTTGGATTGCAGGTAAAGAG
CGATTTATTATGAACTTCTCTGCCTTTTATGTCTATTAGCATTAGCCATA
CTTGCCTAtgaaatttactttcctaaTTAACTAAATCAGTAGGGTCAGAT
GAGTTATTGATTCAAGCAGGACCtctgaaaatttagattttttaaacacG
CCTATGATTTGATTACTCTACACGAGGAGGTCAGGACCAGATAGCAAACC
TAGGGTTAGGCTATTAAAAAGTCACTTTGTTATTGATACCAAATTGAGGG
GGTAGATCCCCCTTTTTGAAAGTAAAAGAAACTTTTAAGTTGATGAAAAT
ACCAAAGTGATGAGGTGAACTCcctttttaaatgtttcttaatttGAAAA
TGGTACCTGACTCGAAATTACTCAAATTTGTAATGTAATGTAGTGTAAAA
TTTATTTGGTCAAAAAGGTCTATAATTTAGTCATTGCAACAAGCATTGAT
GTGGACCTactataatttaaaaaaaataataagataataaaatataaata
attatTTCGACTATTAACAAATAAATACATTCTTACAGTTAAATCGGCTA
AAATAAATGACTATCAGAGATTATTGTAAAAGTAATTGAATTTAGAGAAT
AAGGCTTGCaaagacaaaaagaaattgCTGGAAATTGTGTATTGAGTGTT
ATAGTTTAgctgagcaaaaaaatggatAATAACGTGAGAAATTAATAgaa
cataaatattaaaatacATATATTAAAAGGCTTTTGCTAGGAAATAGGTT
GattaaaattaagaaaatataggtaAATGGGATTCTGGCTTAAATTCTAG
TTACTTGGGTTATATATTATTCATTTGTATATTTTATAACTGAGAATATT
TgaattcttgaaaaactttaGGGCGAAATTGAtagattcaaaatattttg
ttattatttgagaattttaaagtaatacaaaaaacttttcagtaaaataa
aaaCCTTTATTACTTGTTTTAGTAATTTATTTTTGGGGGTGTAGGGGTAT
TTGTCATTTTGCTGGAAGTATTCATGTTTGTTTTAGTACCAATTTAGTGG
ATGGTCCCCCCTTTTTCCTTAAACTGAGGTTAATAAGTTGGTGTTgataa
caattttttatattatttttaccAGGTACGACTGACAAAATGACTGAGTT
TGTGAGTAACGAGGAACTCCAAAGCAAGTTTGAAATGGCGGCGAAAGGTG
ATTCTGAACCGTACTATAATTTTCaaagtaagtgaaaaaatttccaacca
tCAACTAATATTGCtttgcatttttcgattttcaaatcTATTTTCCTTGG
GGCTATGTTCTTCTTCTTGACAATCTCCGGGCTCCTGCGGTTTCTTGTGA
TTTACCTCGAAATTACCCGGTACTATTTTTAAGTAAACTGCAGAGATCTA
CAGGAAATATACTTTTCTGTGCCTATGTGCACAATTTACAACCCCTCCTC
TATCAATTAAGGTAAAATGAGTACTATTTTATGTCTGTCCATGTATTTAT
CATTTTGCCATCCCAAATAGAGAAAAGACCGACACAGAATATTGTGGCAA
ATGAACAAGTAGACAGTGAGCAAGAAGAATTCGATTTTCCCGTTGACTGG
GCCAAGTTCAACACTCTTAAAAAAAGAGTGCTAGTGAGAAATCTAGTTCG
ATGGTACACTGGTAAATCATTtcttaagttttatttttcatataaaaaat
tgATCTTTCTCTTATATCGCTGTATCATTTCAGAAGACATGACCTATTTC
GATAGGATTTTGTCTAAATCATAATCAAAAGTATCACTATCACTATCACT
TCACTTGAATATCTCTGCGGAATAACTCCTTCATTGATTTTAACCTTTGA
TGGTATGTTTGATTATTTGTATCATAAATACTACTAAGAAACCGTTTAAT
AAGAATCGTGAATGAAACTTGATGTGTTTGTTTCATCCTGCACCGGTGTT
TTAAATTTGAGGTGATAATCATTTGACCTTTATAACTCAAtgaaattgtg
aattttgatttccttttttaaaaaatttcagagaCGTGGAAACCGTGGAT
CCCTTCACTCAAACCAGAATGGTGGCCGGATGACATATCATTTCGGTCTA
CCCGAAAGTCTGATGTGTCATCTTTAGATAAGATATTAAATTCTTTTCTG
AAGTTTCGCGCTACAAGCAGTATGGTTAGTTTAGTCTTCGACTTATCTTA
GAGCTCTAGTTGTTGGTTCCTGTTGCCGATAAAGTGTTACTTACGCATAA
AAGTCATTTTGGGTAGTAGATGATAGGGGAGAAAGATAAGATATTAACAT
AACTAAAAATAGAGCAGTTTTAATATGTCAGAGGAGATCGGACTCAATGA
GCCGATGTGATGAACCCTCAGCGgtcatagaggtcgtcgttaaGTTTCTT
AAACGTCGTCGCCATGCTTAGAGACCGTGGTTGAACAAAGAATTTGTCAT
CGAACATAGAGACCGTGGTCGGACGatgtctaaaaaaattaaacgaTGAC
CTCCACGACCGATGAAAGCTTATTATCTCGGCTTATTGAACCCGATCACC
TGATATTAATGTGGTCTGGTTTCATTTTGATCCATAATGACGCCAATAAA
AATTTGCACATCtaattcaaataagtttttttcgGTCCAATTTCAGATTT
ACAACGGGTTAACCAGCTTTCAACCTTTTTTCCAAACTCGAGAAATTGCA
TATTATTGGTTTTGATTATGGCACCGGGTCTAAACCGTTTTTGAAAAAGC
AATGTAGAGGTGAAAAACTTTGACTCCCGCGTAAAGCGAAAAGTTTGTCC
CACGCGGAAAATAGACTCAATGGAAAACCTACTTTAGATTgagaatttta
atattttaaggTGCGGCGTTTTAGAAACTTTGATATTTTACTTGGCGATA
GTGTGAcagataaaaattgaaattcattcAGTATAGTAAGGTCTGTCTTC
TATTTATGAATGATCACGGGACGAATAActtctttttctcatatttttaa
ggctttgtttcAAGCATCGGATCTCCCTGTTTCCTCCGAACAGTGGGCTG
AGCTGAATTGGGAAGACTTTGATTTCCCGAAAAACTGGCTTGCAAAGAAT
TGGTCACCGCCAAAAACTCCAATTAAAAAGAATCTAGTATCTCTAAGGTA
AGAACAGTTTTCAGAgttgatattttacgtggatagcacggtaatctagg
acttttaggccATCGATCGCTCCGTGCTGTAAATGATACTCGATATTTTT
GCTTGCGTTTCCTGATCAGGTAGATATTCAATGGCTATTGCTTCTACACT
TATGCTAGAGGGTTTCAAGAACAAAATCACCGAAACGAAAATGTATTGTT
CATGAAaactttgttcaattttttaatggttttatattttaaattattat
ttACTATTTAAGTAAATATTCGATGTCATGTTGGTTTTAACTAGTACTAT
GTAACTATTTTTGTGATACCAACTCTAaagaaagaataaataaaaataaa
ataaaaattgataccACCGTCGAAAAGAACTAAAGCTCAAAAGCTAACCG
CGCCAACTAGGGATTGATACGTGTATTGGAGTGTCCAAACATTTTCCCTT
GTAAATCTAGCACGACAGGCGCTAATTTTTCAAGTAAGAACACGAAATTA
GCTTTTGATACGAGTATACATTTTAGGTTTATTAGCTGTGTTttataacg
cattaaattaaattgtttCCGTTTAGGCACCGTTGTTTAGTAGCCGATAC
AGATCTGGAGCCTGTTCGACTTCTTACATCAGCAGAATGCATTTCGTTTG
CATTATTTCATGATAAGAAATTTTGGCCTTTCATAAAGCTGGTTACCATA
ACGAGTTGCTTGTCACATATTGACGTTCTGGTCGAATGGGTTAGTTAAGt
ctaataattatttttcaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025639XLOC_025639Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041720-exon-sc0002986-1491911889:6207..6332TCONS_00041720-exon-sc0002986-1491911889:6207..6332Clytia hemisphaericaexon
TCONS_00041720-exon-sc0002986-1510915933:6207..6332TCONS_00041720-exon-sc0002986-1510915933:6207..6332Clytia hemisphaericaexon
TCONS_00041720-exon-sc0002986-1575043694:6207..6332TCONS_00041720-exon-sc0002986-1575043694:6207..6332Clytia hemisphaericaexon
TCONS_00041720-exon-sc0002986-1491911889:6433..6504TCONS_00041720-exon-sc0002986-1491911889:6433..6504Clytia hemisphaericaexon
TCONS_00041720-exon-sc0002986-1510915933:6433..6504TCONS_00041720-exon-sc0002986-1510915933:6433..6504Clytia hemisphaericaexon
TCONS_00041720-exon-sc0002986-1575043694:6433..6504TCONS_00041720-exon-sc0002986-1575043694:6433..6504Clytia hemisphaericaexon
TCONS_00041720-exon-sc0002986-1491911889:6620..6698TCONS_00041720-exon-sc0002986-1491911889:6620..6698Clytia hemisphaericaexon
TCONS_00041720-exon-sc0002986-1510915933:6620..6698TCONS_00041720-exon-sc0002986-1510915933:6620..6698Clytia hemisphaericaexon
TCONS_00041720-exon-sc0002986-1575043694:6620..6698TCONS_00041720-exon-sc0002986-1575043694:6620..6698Clytia hemisphaericaexon
TCONS_00041720-exon-sc0002986-1491911889:7832..7933TCONS_00041720-exon-sc0002986-1491911889:7832..7933Clytia hemisphaericaexon
TCONS_00041720-exon-sc0002986-1510915933:7832..7933TCONS_00041720-exon-sc0002986-1510915933:7832..7933Clytia hemisphaericaexon
TCONS_00041720-exon-sc0002986-1575043694:7832..7933TCONS_00041720-exon-sc0002986-1575043694:7832..7933Clytia hemisphaericaexon
TCONS_00041720-exon-sc0002986-1491911889:9708..9853TCONS_00041720-exon-sc0002986-1491911889:9708..9853Clytia hemisphaericaexon
TCONS_00041720-exon-sc0002986-1510915933:9708..9853TCONS_00041720-exon-sc0002986-1510915933:9708..9853Clytia hemisphaericaexon
TCONS_00041720-exon-sc0002986-1575043694:9708..9853TCONS_00041720-exon-sc0002986-1575043694:9708..9853Clytia hemisphaericaexon
TCONS_00041720-exon-sc0002986-1491911889:10433..10626TCONS_00041720-exon-sc0002986-1491911889:10433..10626Clytia hemisphaericaexon
TCONS_00041720-exon-sc0002986-1510915933:10433..10626TCONS_00041720-exon-sc0002986-1510915933:10433..10626Clytia hemisphaericaexon
TCONS_00041720-exon-sc0002986-1575043694:10433..10626TCONS_00041720-exon-sc0002986-1575043694:10433..10626Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002986supercontigsc0002986:6207..10626 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0338532	0.542688	0	0	0.344475	0.510295	0.663267	0.406046	0	0.111404	1.22804	0	1.47984	0.248229	0	0.863469	0.297838	0	0	0	1.66054	0.848155	0	0.549736	0.161696	0	0.357579	0	1.77803e-08	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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