TCONS_00041718 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041718
Unique NameTCONS_00041718
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length221

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041718 ID=TCONS_00041718|Name=TCONS_00041718|organism=Clytia hemisphaerica|type=transcript|length=221bp
GCTTGATGGCAATGGACAATGGATTTTAGATTTGgttagttaCCGTCATA
CTGCCCAGTAACCTAAATCCATGAATTGTTTTGTATATCTTCACGTGGTT
GGTATAAATGAGAATTGGCTTAAGATTTGTCTGAATTTGTCAAGTACAAG
GTTCAATATCTTTGCAAACACCAACAAATTCTGCTAATAAGATGGACGGG
TGAAAAGCATATTTAACTCAA
Run BLAST on NCBI

transcript from alignment at sc0002985:4117..4958-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041718 ID=TCONS_00041718|Name=TCONS_00041718|organism=Clytia hemisphaerica|type=transcript|length=842bp|location=Sequence derived from alignment at sc0002985:4117..4958- (Clytia hemisphaerica)
GCTTGATGGCAATGGACAATGGATTTTAGATTTGGTAAGTATGCTAAATT
ATCCTTGATGCCTTTTTAGCTTGTACTGGGGAAAAACATTTTTTGGGGTT
GAAATTTCAAGTTTTTGTATGTAACAGAAAATTGCAATCAAAGTTCTAAT
ATTTCTACTTATGTAATTTATAAAACTATGACTCTGACCGGTTTGGCTCT
GACCGGTTAGTAGATTTGCTCTGACCGGTTAGTAGATTATGGCTCTGACC
GGTTAGTAGATTGGCTCTGACATCTGACCGGTTAATAGATTGGCTCTGAC
CGATTAATAGATTGGCTCTGCCCGGTTAGTAGATTGGCTCTGACCGGTTA
GTAGATTGGCTCTGACCGGTTAGTAGATTGGCTCTGACCGGTTAATAGAT
TGGCCCTGACCGATTAATAGATTGGCTCTGACCAGTTAGTAGATTGGCTC
TGACCGGTTAATAGATTGGCTCTGACCGATTAATAGATTGGCTCTGACCG
GTTTTAAAATAGATTGTCCAGTTATATAAGGCTTACTTTCAGCGGTTTTT
GTCAGTGTTCGGTGGAATTAAGATTTGTTGTTTGTGTTCTGTATTTGTTC
ATGATAGCTTGCTGCAAAAATCCTAATTCCCATTTTCATTATTATATACT
TTCAGGTTAGTTACCGTCATACTGCCCAGTAACCTAAATCCATGAATTGT
TTTGTATATCTTCACGTGGTTGGTATAAATGAGAATTGGCTTAAGATTTG
TCTGAATTTGTCAAGTACAAGGTTCAATATCTTTGCAAACACCAACAAAT
TCTGCTAATAAGATGGACGGGTGAAAAGCATATTTAACTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025638XLOC_025638Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041718-exon-sc0002985-1575043694:4925..4958TCONS_00041718-exon-sc0002985-1575043694:4925..4958Clytia hemisphaericaexon
TCONS_00041718-exon-sc0002985-1575043694:4117..4303TCONS_00041718-exon-sc0002985-1575043694:4117..4303Clytia hemisphaericaexon
TCONS_00041718-exon-sc0002985-1510915933:4925..4958TCONS_00041718-exon-sc0002985-1510915933:4925..4958Clytia hemisphaericaexon
TCONS_00041718-exon-sc0002985-1510915933:4117..4303TCONS_00041718-exon-sc0002985-1510915933:4117..4303Clytia hemisphaericaexon
TCONS_00041718-exon-sc0002985-1491911889:4925..4958TCONS_00041718-exon-sc0002985-1491911889:4925..4958Clytia hemisphaericaexon
TCONS_00041718-exon-sc0002985-1491911889:4117..4303TCONS_00041718-exon-sc0002985-1491911889:4117..4303Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002985supercontigsc0002985:4117..4958 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	9.85272	2.13682	2.41176	0	1.23386	1.41832	1.48586	0.989754	1.23608	0	0	2.96882	0.914334	0	0	0	0	0	0	0	0	3.02787	0	0	0	3.64163
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top