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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041710 ID=TCONS_00041710|Name=TCONS_00041710|organism=Clytia hemisphaerica|type=transcript|length=1275bp
TAACTGATCACATGGCCTTAAGGGCGTTTATATACAGGGTGCTCTCCATC
GTAGAGACTTTATATTCAAAATACTACATCTTCCTCCTTGTCATATTGAT
GAGTCAGGGGAGTGGCTTATGCTCAACTCTGGTGACCCTATTGGTCTACC
GAATATTCCCTGATAATTGTTGGTGGCTCGTTGCCTACCAATGATCTATG
TTCTTGATGTTGTCAGCAGTACCGTCTTGGTTGGTGCGCTAAAACTAGAA
AGGAAGGGAGAAACGAGCAGAAGAATGTCTTGATAAATGCAAATAAATGT
CGTTGTGGATATGTCTGCTCGCTTTATACAAGTCTCGAGTTTGTTGTTTT
ATATACAAGTTTTTAAATtatctctttctctctctcaaGGAGTACTGTTT
GCGTTCTGTGTTTTGCTCATTTTTGTTTCGCTGTGTTGTAGGAAGGCCTG
TAGAAGGGGCTATTCGTTTGAAATGTGTAGCATGTCTTGTAATACCCTTC
TCTTGANGAAGGGGCTATTCGTTTGAAATGTGTAGCATGTCTTGTAATAC
CGTTCTCTTGGTTTTCGAATTGTGCAGTTATCATAGTTCCTTTGACGTTA
GTGACGCGCAAAGGTGTTGCATTGTAATATGGTGTGAGCTTATTCTCTTT
AGGCTGACGGACTAAAACCCTATCGCCGCGCTTATAAAGGATGTCTTGCG
CTCGCTTCTTAGTGTCTATATAGTTCTTATTATAACTTTTACTTTTTCTA
TCGTTTTCGTTGGTGTTGGCTTGGAGATTCGTCTCGGCGGTGTTATCAAT
TTGTGGAAggttaaagtttatttttcgatTGAACATAACTTCGGAAGGTG
AGACTTTGGTCGATGAGTGTGGTGTGTTGCGGTAAGCGAACAAATACTTT
TGAACTTCAGTTTCAATGTCTTTACCTTCGAGATGAGCGGTACGGATTGT
TTTGTTAAGTGGTCGCATGAAACGTTCGGCTTCTCCGTTCGCTTGCGGCC
AAAGCGGTGTGATTTTTCGATGGCTGACTCCTCTGGATTGGAGAAACTCT
TTCAATCTTTGCGATGTGAATGGAGGGCCATTATCGGATACAATATATAT
CGGATTTCCGAACAAGTTGAAGGTGCGAGATAGTGATGAAATTGCTGTTG
TTGCGTCGGTTGTCTTGGTAAAGTCAACTACGGGATATCGTGAACGTTGG
TCGATAAGGACGAACAAGTATTTACCATTGGGTAACGGACCAAGGTAATC
GACGTTGACAGTATCCCAAACGTTT Run BLAST on NCBI protein sequence of TCONS_00041710-protein >TCONS_00041710-protein ID=TCONS_00041710-protein|Name=TCONS_00041710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
NVWDTVNVDYLGPLPNGKYLFVLIDQRSRYPVVDFTKTTDATTAISSLSR
TFNLFGNPIYIVSDNGPPFTSQRLKEFLQSRGVSHRKITPLWPQANGEAE
RFMRPLNKTIRTAHLEGKDIETEVQKYLFAYRNTPHSSTKVSPSEVMFNR
KINFNLPQIDNTAETNLQANTNENDRKSKSYNKNYIDTKKRAQDILYKRG
DRVLVRQPKENKLTPYYNATPLRVTNVKGTMITAQFENQENGITRHATHF
KRIAPXSREGYYKTCYTFQTNSPFYRPSYNTAKQK Run BLAST on NCBI transcript from alignment at sc0002981:7131..8405 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041710 ID=TCONS_00041710|Name=TCONS_00041710|organism=Clytia hemisphaerica|type=transcript|length=1275bp|location=Sequence derived from alignment at sc0002981:7131..8405 (Clytia hemisphaerica)
AAACGTTTGGGATACTGTCAACGTCGATTACCTTGGTCCGTTACCCAATG
GTAAATACTTGTTCGTCCTTATCGACCAACGTTCACGATATCCCGTAGTT
GACTTTACCAAGACAACCGACGCAACAACAGCAATTTCATCACTATCTCG
CACCTTCAACTTGTTCGGAAATCCGATATATATTGTATCCGATAATGGCC
CTCCATTCACATCGCAAAGATTGAAAGAGTTTCTCCAATCCAGAGGAGTC
AGCCATCGAAAAATCACACCGCTTTGGCCGCAAGCGAACGGAGAAGCCGA
ACGTTTCATGCGACCACTTAACAAAACAATCCGTACCGCTCATCTCGAAG
GTAAAGACATTGAAACTGAAGTTCAAAAGTATTTGTTCGCTTACCGCAAC
ACACCACACTCATCGACCAAAGTCTCACCTTCCGAAGTTATGTTCAatcg
aaaaataaactttaaccTTCCACAAATTGATAACACCGCCGAGACGAATC
TCCAAGCCAACACCAACGAAAACGATAGAAAAAGTAAAAGTTATAATAAG
AACTATATAGACACTAAGAAGCGAGCGCAAGACATCCTTTATAAGCGCGG
CGATAGGGTTTTAGTCCGTCAGCCTAAAGAGAATAAGCTCACACCATATT
ACAATGCAACACCTTTGCGCGTCACTAACGTCAAAGGAACTATGATAACT
GCACAATTCGAAAACCAAGAGAACGGTATTACAAGACATGCTACACATTT
CAAACGAATAGCCCCTTCNTCAAGAGAAGGGTATTACAAGACATGCTACA
CATTTCAAACGAATAGCCCCTTCTACAGGCCTTCCTACAACACAGCGAAA
CAAAAATGAGCAAAACACAGAACGCAAACAGTACTCCttgagagagagaa
agagataATTTAAAAACTTGTATATAAAACAACAAACTCGAGACTTGTAT
AAAGCGAGCAGACATATCCACAACGACATTTATTTGCATTTATCAAGACA
TTCTTCTGCTCGTTTCTCCCTTCCTTTCTAGTTTTAGCGCACCAACCAAG
ACGGTACTGCTGACAACATCAAGAACATAGATCATTGGTAGGCAACGAGC
CACCAACAATTATCAGGGAATATTCGGTAGACCAATAGGGTCACCAGAGT
TGAGCATAAGCCACTCCCCTGACTCATCAATATGACAAGGAGGAAGATGT
AGTATTTTGAATATAAAGTCTCTACGATGGAGAGCACCCTGTATATAAAC
GCCCTTAAGGCCATGTGATCAGTTA Coding sequence (CDS) from alignment at sc0002981:7131..8405 >TCONS_00041710 ID=TCONS_00041710|Name=TCONS_00041710|organism=Clytia hemisphaerica|type=CDS|length=858bp|location=Sequence derived from alignment at sc0002981:7131..8405 (Clytia hemisphaerica)
AACGTTTGGGATACTGTCAACGTCGATTACCTTGGTCCGTTACCCAATGG
TAAATACTTGTTCGTCCTTATCGACCAACGTTCACGATATCCCGTAGTTG
ACTTTACCAAGACAACCGACGCAACAACAGCAATTTCATCACTATCTCGC
ACCTTCAACTTGTTCGGAAATCCGATATATATTGTATCCGATAATGGCCC
TCCATTCACATCGCAAAGATTGAAAGAGTTTCTCCAATCCAGAGGAGTCA
GCCATCGAAAAATCACACCGCTTTGGCCGCAAGCGAACGGAGAAGCCGAA
CGTTTCATGCGACCACTTAACAAAACAATCCGTACCGCTCATCTCGAAGG
TAAAGACATTGAAACTGAAGTTCAAAAGTATTTGTTCGCTTACCGCAACA
CACCACACTCATCGACCAAAGTCTCACCTTCCGAAGTTATGTTCAatcga
aaaataaactttaaccTTCCACAAATTGATAACACCGCCGAGACGAATCT
CCAAGCCAACACCAACGAAAACGATAGAAAAAGTAAAAGTTATAATAAGA
ACTATATAGACACTAAGAAGCGAGCGCAAGACATCCTTTATAAGCGCGGC
GATAGGGTTTTAGTCCGTCAGCCTAAAGAGAATAAGCTCACACCATATTA
CAATGCAACACCTTTGCGCGTCACTAACGTCAAAGGAACTATGATAACTG
CACAATTCGAAAACCAAGAGAACGGTATTACAAGACATGCTACACATTTC
AAACGAATAGCCCCTTCNTCAAGAGAAGGGTATTACAAGACATGCTACAC
ATTTCAAACGAATAGCCCCTTCTACAGGCCTTCCTACAACACAGCGAAAC
AAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041710-exon-sc0002981-1491911889:7131..8405 | TCONS_00041710-exon-sc0002981-1491911889:7131..8405 | Clytia hemisphaerica | exon |
| TCONS_00041710-exon-sc0002981-1510915933:7131..8405 | TCONS_00041710-exon-sc0002981-1510915933:7131..8405 | Clytia hemisphaerica | exon |
| TCONS_00041710-exon-sc0002981-1575043694:7131..8405 | TCONS_00041710-exon-sc0002981-1575043694:7131..8405 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002981 | supercontig | sc0002981:7131..8405 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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