TCONS_00041696 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041696
Unique NameTCONS_00041696
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041696 ID=TCONS_00041696|Name=TCONS_00041696|organism=Clytia hemisphaerica|type=transcript|length=411bp
ATTTTAAACTGGGGGCGCCACAGGTTAGCGGCAGCATGCGGTCACGTTCG
TCACGCAACTCATATTGAACGATGGGAATTTGCAACGTGTTgttaaagaa
ttttttccaGAATCGGAACTTGCAAACGTGATTGCAGATTGCCTTGTACC
TGATGTTATTATAAAAATGATCGAAGTTACGAACAGAGTATCTCGAGTTA
CTGTAGAAAGATCTCTCTTACAATTGACGTTTGATGTATAAATGaaacCA
TGTTGCTTCACCAACCAACTTTCATACACCAACATTCATCTTCATCCCGA
CGCAACATCATCAGTACGAAGGACACTCTCATTATGAGTTTTTAATAAGT
TTTAAATATtgtattgttatttttaagtaagTTTGCTAAGTATGTAATAA
ATTCTCTGCTA
Run BLAST on NCBI

transcript from alignment at sc0002975:3593..5129-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041696 ID=TCONS_00041696|Name=TCONS_00041696|organism=Clytia hemisphaerica|type=transcript|length=1537bp|location=Sequence derived from alignment at sc0002975:3593..5129- (Clytia hemisphaerica)
ATTTTAAACTGGGGGCGCCACAGGTTAGGTAAGTAAAATATCTTTTTCGG
GCTAAATGTCAAAATAATTAGTACAGGTTGTTATATTAAAATAAAACCTC
TAACCTTTGGTACCCCCGGTTTAAAATTTGGCCTACTTTTTGACAAAAGT
GGGCAGATTTGATAAAAAAATTATTCTGTTTCCAGCGGCAGCATGCGGTC
ACGTTCGTCACGCAACTCATATTGAACGATGGGAATTTGCAACGTGTTGT
TAAAGAATTTTTTCCAGAATCGGAACTTGCAAACGTGATTGCAGATTGCC
TTGTACCTGATGTAAGTACTTTAAAAAATTGCGTAATTTTAGGTTTCTTT
GAAAAACGTGATGGTTGCAATTTAATACACGCTTTTTTTTATAAGAATAG
TGTACTTTGGATTTGAGAGTTTTGGACTTTTGAGTGAACATTTGGGTTAA
AATTACATTTCTTCCTCAAAGCTTCAATTTATCTCTAACAAAGGAAGCAG
TTATTTCTGTTAACAAAATACAAATGACTGTATTCTTATCAAATTCTTTG
AAATTCACCCTGGAGGGTATTCTTAGGATACATTCTTACGATTTGGCCAT
AACTTTCACCCTGATATTCTTATAGAAGATATTCTTATAAGAAAAGCGTG
TATTAAGATAAACTTTTCATAAATCAGTTCTCGAGATTTTGATCGAATCA
GTAAAAAAAATAATTTGAGAAAGTGCTGTTCATGGCATGCATAAGTTATG
TTTTACATTTTCTTTTTCTCACAGGTTATTATAAAAATGATCGAAGTTAC
GAACAGAGTATCTCGAGTTACTGTAGAAAGATCTCTCTTACAATTGACGT
TTGATGTATAAATGGTAAGTTACAATTTGAATAATGCTCTAAATAAACTA
AATCTAGGCAAATAGCTTCGCACATTTATCATTGCATTTGATTGATATAC
ACTCTTGTTTATAAACATACATGTTGTTTTTTTTATAAGCATAACGCTTA
TAAGCATATGAAGGCTCAGATTTGCAGAATTCCTAAGCATAACATGAGCA
TATATGATGCCTATACATGAGCCTAAATTTTTTTCAAGTGGTCATTTTAA
TCTGTTTTTGTTTCATTTTTATCTGGTTTGGTAGAGGTCAAGTAAAAAAT
AAGACATTCCACGGCTCCCAAAGAAAATCTGAACAAATTTTTTACAAAAT
TTCATTAAAAAACGTGCCTCGGGGTGAATCATAAGCATAATTCTTAAACA
TATAATAAGCATAAACTATGTCTGGATGCTTTGAGAACTGAAGCATACAC
GAGCCTGACCAAGGGTATAAAAAAAAACATGTACGGGAAAATCTATTTTT
AGTCTAATTTTGATTTTTAGAAACCATGTTGCTTCACCAACCAACTTTCA
TACACCAACATTCATCTTCATCCCGACGCAACATCATCAGTACGAAGGAC
ACTCTCATTATGAGTTTTTAATAAGTTTTAAATATTGTATTGTTATTTTT
AAGTAAGTTTGCTAAGTATGTAATAAATTCTCTGCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025621XLOC_025621Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041696-exon-sc0002975-1575043694:5102..5129TCONS_00041696-exon-sc0002975-1575043694:5102..5129Clytia hemisphaericaexon
TCONS_00041696-exon-sc0002975-1575043694:4819..4944TCONS_00041696-exon-sc0002975-1575043694:4819..4944Clytia hemisphaericaexon
TCONS_00041696-exon-sc0002975-1575043694:4266..4355TCONS_00041696-exon-sc0002975-1575043694:4266..4355Clytia hemisphaericaexon
TCONS_00041696-exon-sc0002975-1575043694:3593..3759TCONS_00041696-exon-sc0002975-1575043694:3593..3759Clytia hemisphaericaexon
TCONS_00041696-exon-sc0002975-1510915933:5102..5129TCONS_00041696-exon-sc0002975-1510915933:5102..5129Clytia hemisphaericaexon
TCONS_00041696-exon-sc0002975-1510915933:4819..4944TCONS_00041696-exon-sc0002975-1510915933:4819..4944Clytia hemisphaericaexon
TCONS_00041696-exon-sc0002975-1510915933:4266..4355TCONS_00041696-exon-sc0002975-1510915933:4266..4355Clytia hemisphaericaexon
TCONS_00041696-exon-sc0002975-1510915933:3593..3759TCONS_00041696-exon-sc0002975-1510915933:3593..3759Clytia hemisphaericaexon
TCONS_00041696-exon-sc0002975-1491911889:5102..5129TCONS_00041696-exon-sc0002975-1491911889:5102..5129Clytia hemisphaericaexon
TCONS_00041696-exon-sc0002975-1491911889:4819..4944TCONS_00041696-exon-sc0002975-1491911889:4819..4944Clytia hemisphaericaexon
TCONS_00041696-exon-sc0002975-1491911889:4266..4355TCONS_00041696-exon-sc0002975-1491911889:4266..4355Clytia hemisphaericaexon
TCONS_00041696-exon-sc0002975-1491911889:3593..3759TCONS_00041696-exon-sc0002975-1491911889:3593..3759Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002975supercontigsc0002975:3593..5129 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.264622	0.122827	0	0	0.798571	0.766988	3.95181	2.12854	0.547716	0.511589	0	0.313565	0.0930142	0.00968332	0	0	0	0.200661	1.51855	0	1.06975	0.423091	0	0.954855	1.5395	1.74169	0.000216559	0.454581	1.20852	0.833298
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top