TCONS_00041692 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041692
Unique NameTCONS_00041692
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length704

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041692 ID=TCONS_00041692|Name=TCONS_00041692|organism=Clytia hemisphaerica|type=transcript|length=704bp
CTTCGAGCAGGTTAAGTGTTTGAATATAATTACCTTCACATTAAATTCAA
CATACTAAACTGAAAAATGTactaattatttttaaatagaaaataatgaa
aaaccgTTTTTGTAGTGCTGCTGATCTGGATTCTTATTTTCAAGAATCTG
GTAGAGCAGGTCGGGATGGCAAGCAAAGTGTTGCCTTACTTTTACGCTAC
CCAAAAAGTTTTATTCGAAATTCTTCGGAAACAATAAAGGAATACTGTTT
GTTAGAAGACAAATGTCGTCGACAAATGTTATTGAAACTTTATGACTCTT
CTGAAAAAATTCCTGAGATCACGCCACAACACAACTGCTGCGACTTTTGC
TATCAGTCATGTGACTGTGGTGATTGTCACTTACCCAAACACTTTATTGA
TGTGGACGAGATTAAGCCAATTATTGATGTTGATGAAGAAGTGGTAGTTG
AAGAAGACACTGAATGTTTTGAGAAAGAGGACAGTGGTAACGAAATTGAC
TCAGATGAGTGAGTGAATCTATTTGAATTACTCACTTTTATAATTAGCCT
GGAGATTCAtgatatgatttcttattctatatactgatggcgaaatatat
aacaATAATGGGCTGAGAGTtcgaatttcccagatcctaataactgTTGA
AagcacagccaatcaaattttgttatttttttactggtcacactttcaaA
ATTT
Run BLAST on NCBI

protein sequence of TCONS_00041692-protein

>TCONS_00041692-protein ID=TCONS_00041692-protein|Name=TCONS_00041692-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MKNRFCSAADLDSYFQESGRAGRDGKQSVALLLRYPKSFIRNSSETIKEY
CLLEDKCRRQMLLKLYDSSEKIPEITPQHNCCDFCYQSCDCGDCHLPKHF
IDVDEIKPIIDVDEEVVVEEDTECFEKEDSGNEIDSDE
Run BLAST on NCBI

transcript from alignment at sc0002972:11272..11975

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041692 ID=TCONS_00041692|Name=TCONS_00041692|organism=Clytia hemisphaerica|type=transcript|length=704bp|location=Sequence derived from alignment at sc0002972:11272..11975 (Clytia hemisphaerica)
AAATTttgaaagtgtgaccagtaaaaaaataacaaaatttgattggctgt
gctTTCAAcagttattaggatctgggaaattcgaACTCTCAGCCCATTAT
tgttatatatttcgccatcagtatatagaataagaaatcatatcaTGAAT
CTCCAGGCTAATTATAAAAGTGAGTAATTCAAATAGATTCACTCACTCAT
CTGAGTCAATTTCGTTACCACTGTCCTCTTTCTCAAAACATTCAGTGTCT
TCTTCAACTACCACTTCTTCATCAACATCAATAATTGGCTTAATCTCGTC
CACATCAATAAAGTGTTTGGGTAAGTGACAATCACCACAGTCACATGACT
GATAGCAAAAGTCGCAGCAGTTGTGTTGTGGCGTGATCTCAGGAATTTTT
TCAGAAGAGTCATAAAGTTTCAATAACATTTGTCGACGACATTTGTCTTC
TAACAAACAGTATTCCTTTATTGTTTCCGAAGAATTTCGAATAAAACTTT
TTGGGTAGCGTAAAAGTAAGGCAACACTTTGCTTGCCATCCCGACCTGCT
CTACCAGATTCTTGAAAATAAGAATCCAGATCAGCAGCACTACAAAAAcg
gtttttcattattttctatttaaaaataattagtACATTTTTCAGTTTAG
TATGTTGAATTTAATGTGAAGGTAATTATATTCAAACACTTAACCTGCTC
GAAG

Coding sequence (CDS) from alignment at sc0002972:11272..11975

>TCONS_00041692 ID=TCONS_00041692|Name=TCONS_00041692|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at sc0002972:11272..11975 (Clytia hemisphaerica)
TCACTCATCTGAGTCAATTTCGTTACCACTGTCCTCTTTCTCAAAACATT
CAGTGTCTTCTTCAACTACCACTTCTTCATCAACATCAATAATTGGCTTA
ATCTCGTCCACATCAATAAAGTGTTTGGGTAAGTGACAATCACCACAGTC
ACATGACTGATAGCAAAAGTCGCAGCAGTTGTGTTGTGGCGTGATCTCAG
GAATTTTTTCAGAAGAGTCATAAAGTTTCAATAACATTTGTCGACGACAT
TTGTCTTCTAACAAACAGTATTCCTTTATTGTTTCCGAAGAATTTCGAAT
AAAACTTTTTGGGTAGCGTAAAAGTAAGGCAACACTTTGCTTGCCATCCC
GACCTGCTCTACCAGATTCTTGAAAATAAGAATCCAGATCAGCAGCACTA
CAAAAAcggtttttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025617XLOC_025617Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041692-proteinTCONS_00041692-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041692-exon-sc0002972-1491911889:11272..11975TCONS_00041692-exon-sc0002972-1491911889:11272..11975Clytia hemisphaericaexon
TCONS_00041692-exon-sc0002972-1510915933:11272..11975TCONS_00041692-exon-sc0002972-1510915933:11272..11975Clytia hemisphaericaexon
TCONS_00041692-exon-sc0002972-1575043694:11272..11975TCONS_00041692-exon-sc0002972-1575043694:11272..11975Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002972supercontigsc0002972:11272..11975 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.143344	0	0.0811509	0.0793935	7.44097	6.10335	5.26063	7.56408	5.45635	5.03683	2.98165	5.937	3.81327	4.08093	0.0602458	0.218736	0	0	0	0.159453	0.0692968	0	0.0821779	0	2.82071	4.25543	0	0.012668	0.0795506	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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