TCONS_00041689 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041689
Unique NameTCONS_00041689
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length813

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041689 ID=TCONS_00041689|Name=TCONS_00041689|organism=Clytia hemisphaerica|type=transcript|length=813bp
CGAAACCAACCATCCCAAGAACAATCCCAACCATCCCAAAAGCAGCTCAG
CCtaccaagaaaaagaaaacgaaaacatCCACTCCAAAGAGAAAAGATGT
TTCATTTGAAATAGAAAATTCAGACATGGTTTTACAGCAGTCAAATATAC
AGAATGTGAAACCAACCTCTCAAAAAGgtGTAGAtaaaccaaaaccaaaa
ccaccaaAAAGAAAAGCTCAACAGAAGGTTGAAAATTTGGATGGAGCTGT
GAAGTCAAAATGGTATTATGGGCCAGCGCAAGAGAAAAACATATTCAAAG
AAAACCCAATTGTAGAGGGCCCACGGCTGAGAAGACCAAAACAGCAGGAA
AATTGATCAGAcAATGACAATAGCTTCTAACTGGTTACCGTACTTTGCGT
CCACATGGCTGTATGGCGATGGTGTTTTGAACGACTCGACATGTAAAAAA
CGCGTAAACAGCGAAAACagtatataagattttttaatttgataaaatat
ttttcttattcgTAGTAAAGATTACATTTATAAACAAGAATTATTCCAAA
CGTTAAAGGTTAAAGGTTAAAGGTCGTACTTAGTAACTAATATACCTTTG
ATTTAGGTCTGCAAAATAGTGGTGGAACTTTCggtttttttgttgaaatg
taGCCTAGAAGCTTGACAActcaatacacgggtttcgaattaaatctggc
gcgagagaaaaaatcaagtaaataaaaggagcgataaggggaaatgcctt
ataaaaggttgatagatttcctttcttctcttttgaaagccaggtgttca
ttcaaaagatgtt
Run BLAST on NCBI

protein sequence of TCONS_00041689-protein

>TCONS_00041689-protein ID=TCONS_00041689-protein|Name=TCONS_00041689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
KPTIPRTIPTIPKAAQPTKKKKTKTSTPKRKDVSFEIENSDMVLQQSNIQ
NVKPTSQKGVDKPKPKPPKRKAQQKVENLDGAVKSKWYYGPAQEKNIFKE
NPIVEGPRLRRPKQQEN
Run BLAST on NCBI

transcript from alignment at sc0002972:13417..15146-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041689 ID=TCONS_00041689|Name=TCONS_00041689|organism=Clytia hemisphaerica|type=transcript|length=1730bp|location=Sequence derived from alignment at sc0002972:13417..15146- (Clytia hemisphaerica)
CGAAACCAACCATCCCAAGAACAATCCCAACCATCCCAAAAGCAGCTCAG
CCTACCAAGAAAAAGAAAACGAAAACATCCACTCCAAAGAGAAAAGATGT
TTCATTTGAAATAGGTAATTTTTCAAACACTTCTTTAGGCAAGAAAACAA
AAAATTTAATTTTGGCGGGAACTTATTTTGGCGAGTGAGCAAAAAATTTA
ATTTTTGCGGGAACTAATTTTGGCAAATTTGGTCTAAATCGGCCAAATCC
GCCAAAATTAGTTCCCGCGAAAATAAGTTCCCTTAAGATATTTGTAACTT
TACATGCACGTTCAAGTTTTTCGTGCATTGCCAGTACTCTTAAACTTCTA
TGATAAAATGATTAAAACTTTATTACAATTCTTTTCTCAGAAAATTCAGA
CATGGTTTTACAGCAGTCAAATATACAGAATGTGAAACCAACCTCTCAAA
AAGGTATCCTATTATGAAACTTTTAATTTTGTGGTAAACATCTTTTTACC
TTAAGTAGGGGATTAATTTTTGCGGGAAGTTATTTTTGTGAGGACGGGAA
TTGTAAATTTTTTCCTAACGACAGGTAGATTGTATAGGCCTGTCGTCATG
CAAAAATTTTTGTTTTTCCGTGTAGCATGCCTCGAAAACAAAAAGCAATT
TTTCAGCCATTTTCAGTTTACCTCTGTTTGATGTGAAATACAATCATATT
ATTATTTTTAGGTGTAGATAAACCAAAACCAAAACCACCAAAAAGAAAAG
CTCAACAGAAGGTTGAAAATTTGGATGGAGGTGAGTCCGCCGACCGACCC
ATTCTTTGTCAAAAAAATCTGACACTTTTCAGTCGGGAAGTCAGTAATTA
TGTTCGACTTTTTATGGATTTTCTCAGCACCGGCATCCGAAAATCGACCG
AACCATTTGTTTGGATGTCACCCTCCTGAAAATTAGTTCCGTGATAATTA
GTTACCGCGAAAATTAGTTCCCTTAATAAGGTAAGAAAGAAAAAAAACTT
TAAAAACTGCTTACTTTTCTTGTCAGCTGTGAAGTCAAAATGGTATTATG
GGCCAGCGCAAGAGAAAAACATATTCAAAGAAAACCCAATTGTAGAGGGC
CCACGGCTGAGAAGACCAAAACAGCAGGAAAATTGATCAGACGTAAGTTT
TTTTTCTTTTTTGTTTTCTTCACTGTTTGCTGATTATTCATTGTTGTCAG
AACAATCATCTTTATTTGAGTTTCAAATTTTTATGTAGCAAGACATTTCA
ATTGATTGCTTTAATTTATTGTTCCTTAGAATGACAATAGCTTCTAACTG
GTTACCGTACTTTGCGTCCACATGGCTGTATGGCGATGGTGTTTTGAACG
ACTCGACATGTAAAAAACGCGTAAACAGCGAAAACAGTATATAAGATTTT
TTAATTTGATAAAATATTTTTCTTATTCGTAGTAAAGATTACATTTATAA
ACAAGAATTATTCCAAACGTTAAAGGTTAAAGGTTAAAGGTCGTACTTAG
TAACTAATATACCTTTGATTTAGGTCTGCAAAATAGTGGTGGAACTTTCG
GTTTTTTTGTTGAAATGTAGCCTAGAAGCTTGACAACTCAATACACGGGT
TTCGAATTAAATCTGGCGCGAGAGAAAAAATCAAGTAAATAAAAGGAGCG
ATAAGGGGAAATGCCTTATAAAAGGTTGATAGATTTCCTTTCTTCTCTTT
TGAAAGCCAGGTGTTCATTCAAAAGATGTT

Coding sequence (CDS) from alignment at sc0002972:13417..15146-

>TCONS_00041689 ID=TCONS_00041689|Name=TCONS_00041689|organism=Clytia hemisphaerica|type=CDS|length=1416bp|location=Sequence derived from alignment at sc0002972:13417..15146- (Clytia hemisphaerica)
CTGTGAAGTCAAAATGGTATTATGGGCCAGCGCAAGAGAAAAACATATTC
AAAGAAAACCCAATTGTAGAGGGCCCACGGCTGAGAAGACCAAAACAGCA
GGAAAATTGAGTGTAGATAAACCAAAACCAAAACCACCAAAAAGAAAAGC
TCAACAGAAGGTTGAAAATTTGGATGGAGAAAATTCAGACATGGTTTTAC
AGCAGTCAAATATACAGAATGTGAAACCAACCTCTCAAAAAGAAACCAAC
CATCCCAAGAACAATCCCAACCATCCCAAAAGCAGCTCAGCCTACCAAGA
AAAAGAAAACGAAAACATCCACTCCAAAGAGAAAAGATGTTTCATTTGAA
ATAGCTGTGAAGTCAAAATGGTATTATGGGCCAGCGCAAGAGAAAAACAT
ATTCAAAGAAAACCCAATTGTAGAGGGCCCACGGCTGAGAAGACCAAAAC
AGCAGGAAAATTGAGTGTAGATAAACCAAAACCAAAACCACCAAAAAGAA
AAGCTCAACAGAAGGTTGAAAATTTGGATGGAGAAAATTCAGACATGGTT
TTACAGCAGTCAAATATACAGAATGTGAAACCAACCTCTCAAAAAGAAAC
CAACCATCCCAAGAACAATCCCAACCATCCCAAAAGCAGCTCAGCCTACC
AAGAAAAAGAAAACGAAAACATCCACTCCAAAGAGAAAAGATGTTTCATT
TGAAATAGCTGTGAAGTCAAAATGGTATTATGGGCCAGCGCAAGAGAAAA
ACATATTCAAAGAAAACCCAATTGTAGAGGGCCCACGGCTGAGAAGACCA
AAACAGCAGGAAAATTGAGTGTAGATAAACCAAAACCAAAACCACCAAAA
AGAAAAGCTCAACAGAAGGTTGAAAATTTGGATGGAGAAAATTCAGACAT
GGTTTTACAGCAGTCAAATATACAGAATGTGAAACCAACCTCTCAAAAAG
AAACCAACCATCCCAAGAACAATCCCAACCATCCCAAAAGCAGCTCAGCC
TACCAAGAAAAAGAAAACGAAAACATCCACTCCAAAGAGAAAAGATGTTT
CATTTGAAATAGCTGTGAAGTCAAAATGGTATTATGGGCCAGCGCAAGAG
AAAAACATATTCAAAGAAAACCCAATTGTAGAGGGCCCACGGCTGAGAAG
ACCAAAACAGCAGGAAAATTGAGTGTAGATAAACCAAAACCAAAACCACC
AAAAAGAAAAGCTCAACAGAAGGTTGAAAATTTGGATGGAGAAAATTCAG
ACATGGTTTTACAGCAGTCAAATATACAGAATGTGAAACCAACCTCTCAA
AAAGAAACCAACCATCCCAAGAACAATCCCAACCATCCCAAAAGCAGCTC
AGCCTACCAAGAAAAAGAAAACGAAAACATCCACTCCAAAGAGAAAAGAT
GTTTCATTTGAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025614XLOC_025614Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041689-exon-sc0002972-1575043694:15033..15146TCONS_00041689-exon-sc0002972-1575043694:15033..15146Clytia hemisphaericaexon
TCONS_00041689-exon-sc0002972-1575043694:14694..14756TCONS_00041689-exon-sc0002972-1575043694:14694..14756Clytia hemisphaericaexon
TCONS_00041689-exon-sc0002972-1575043694:14367..14435TCONS_00041689-exon-sc0002972-1575043694:14367..14435Clytia hemisphaericaexon
TCONS_00041689-exon-sc0002972-1575043694:14005..14120TCONS_00041689-exon-sc0002972-1575043694:14005..14120Clytia hemisphaericaexon
TCONS_00041689-exon-sc0002972-1575043694:13417..13867TCONS_00041689-exon-sc0002972-1575043694:13417..13867Clytia hemisphaericaexon
TCONS_00041689-exon-sc0002972-1510915933:15033..15146TCONS_00041689-exon-sc0002972-1510915933:15033..15146Clytia hemisphaericaexon
TCONS_00041689-exon-sc0002972-1510915933:14694..14756TCONS_00041689-exon-sc0002972-1510915933:14694..14756Clytia hemisphaericaexon
TCONS_00041689-exon-sc0002972-1510915933:14367..14435TCONS_00041689-exon-sc0002972-1510915933:14367..14435Clytia hemisphaericaexon
TCONS_00041689-exon-sc0002972-1510915933:14005..14120TCONS_00041689-exon-sc0002972-1510915933:14005..14120Clytia hemisphaericaexon
TCONS_00041689-exon-sc0002972-1510915933:13417..13867TCONS_00041689-exon-sc0002972-1510915933:13417..13867Clytia hemisphaericaexon
TCONS_00041689-exon-sc0002972-1491911889:15033..15146TCONS_00041689-exon-sc0002972-1491911889:15033..15146Clytia hemisphaericaexon
TCONS_00041689-exon-sc0002972-1491911889:14694..14756TCONS_00041689-exon-sc0002972-1491911889:14694..14756Clytia hemisphaericaexon
TCONS_00041689-exon-sc0002972-1491911889:14367..14435TCONS_00041689-exon-sc0002972-1491911889:14367..14435Clytia hemisphaericaexon
TCONS_00041689-exon-sc0002972-1491911889:14005..14120TCONS_00041689-exon-sc0002972-1491911889:14005..14120Clytia hemisphaericaexon
TCONS_00041689-exon-sc0002972-1491911889:13417..13867TCONS_00041689-exon-sc0002972-1491911889:13417..13867Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041689-proteinTCONS_00041689-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002972supercontigsc0002972:13417..15146 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.143808	0.139207	0.020096	0.084448	1.2339	0.550139	1.15411	1.25184	0.776814	0.464826	0.32109	0.437122	0.575864	0.193594	1.83762	1.53951	1.21394	0.594649	0.273286	0.511421	0.420357	0.110341	0.369604	0	0.159928	0.607069	0	0.102567	0	0.31097
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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