TCONS_00041688 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041688
Unique NameTCONS_00041688
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length772

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041688 ID=TCONS_00041688|Name=TCONS_00041688|organism=Clytia hemisphaerica|type=transcript|length=772bp
TTGAAGAAAAGTCTGTTGGGAAACTGCGACGAACAAGATGAATTTCAACA
AATGTTAGAGGAGCGCTGGATGCCGAAAAGAACCAGAACGGAGAAGCGAA
GAGACAGAAAATCATTTCTTGCGTCACCAGCTACCCCTATCCGATTCTCA
AAACGTGGTGTCATCAAGAAGACGGAAAAGTGTAGGTGCCAGATTTGCCA
TAAAGCGTATGAAAGAGAGTTACCAGAGTTTGAAATGCGTCCAGAAGATC
ATAATGGTTCAATCCCTTACAAAACCTGTCCACCGCAGCTAAAGATGAAA
GAAGACATAAAATTGCATTTGAAATAGGAAAACAGTCGAACGCAATCCAT
ACGGATATTGCGCGGGAcattctgaaaaaaagaaaggaaGAAATTGAAGG
CTTTATCAACGATTCCTCATGTTCAATCAATAACCTTTTTTGAAAGCAAT
AGTTAAAGGTAATCAATCAAAGACTTTGAAGAACCTTAAAGCAAGTGAAT
CAAACGAATTAGTTCAGGAATACTTCAATTTGAAGAATAAAGGCCTGCAA
GAAACAGTTCAGCATATATTGTTCAAACTATACCCGACGCAACTTACCAT
TGATGGAGACGGGACGAGTAGGATGGACTTCGTTATTTCGAAGTTGTTCT
TGAATGTTGATGAGTATTAATGGGATTAAGCTTATATATTACATTGAGTA
ATTTGATTAGGGTACGTTGTAGGAAGACATTTCAGTCAAACTAACATTTT
TTACCAGTAATCCACCAAATCA
Run BLAST on NCBI

protein sequence of TCONS_00041688-protein

>TCONS_00041688-protein ID=TCONS_00041688-protein|Name=TCONS_00041688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
LKKSLLGNCDEQDEFQQMLEERWMPKRTRTEKRRDRKSFLASPATPIRFS
KRGVIKKTEKCRCQICHKAYERELPEFEMRPEDHNGSIPYKTCPPQLKMK
EDIKLHLK
Run BLAST on NCBI

transcript from alignment at sc0002972:55..1117+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041688 ID=TCONS_00041688|Name=TCONS_00041688|organism=Clytia hemisphaerica|type=transcript|length=1063bp|location=Sequence derived from alignment at sc0002972:55..1117+ (Clytia hemisphaerica)
TTGAAGAAAAGTCTGTTGGGAAACTGCGACGAACAAGATGAATTTCAACA
AATGTTAGAGGAGCGCTGGATGCCGAAAAGAACCAGAACGGAGAAGCGAA
GAGACAGAAAATCATTTCTTGCGTCACCAGCTACCCCTATCCGATTCTCA
AAACGTGGTGTCATCAAGAAGACGGAAAAGTGTAGGTGCCAGATTTGCCA
TAAAGCGTATGAAAGAGAGTTACCAGAGTTTGAAATGCGTCCAGAAGATC
ATAATGGTTCAATCCCTTACAAAACCTGTCCACCGCAGCTAAAGATGAAA
GAAGACATAAAATTGCATTTGAAATAGGTgagaaaaagtaattttgactA
TACTATACCAATATCTCTTGAATATTTATCATCAAGAAtccttgttttca
tttaaagacTTTTTAGTGTAGGTCTGTCTTCAAACTTTGGTAGGGCCTGC
CATTTTGAAGAATGGTAAACTTGGGTTGAAGTATCTGAATGAAAGATAAC
CAAACCAAACTCAATTAAAGGCAAACAAATAAGAGGAGGTTAGAAGGCTC
TGTACATTATTATTTCTGTTAGAAATTCTTTCAAGTAGTTTTTCTCCGAT
TTTTTTGTTAACTATCAGGAAAACAGTCGAACGCAATCCATACGGATATT
GCGCGGGAcattctgaaaaaaagaaaggaaGAAATTGAAGGCTTTATCAA
CGATTCCTCATGTTCAATCAATAACCTTTTTTGAAAGCAATAGTTAAAGG
TAATCAATCAAAGACTTTGAAGAACCTTAAAGCAAGTGAATCAAACGAAT
TAGTTCAGGAATACTTCAATTTGAAGAATAAAGGCCTGCAAGAAACAGTT
CAGCATATATTGTTCAAACTATACCCGACGCAACTTACCATTGATGGAGA
CGGGACGAGTAGGATGGACTTCGTTATTTCGAAGTTGTTCTTGAATGTTG
ATGAGTATTAATGGGATTAAGCTTATATATTACATTGAGTAATTTGATTA
GGGTACGTTGTAGGAAGACATTTCAGTCAAACTAACATTTTTTACCAGTA
ATCCACCAAATCA

Coding sequence (CDS) from alignment at sc0002972:55..1117+

>TCONS_00041688 ID=TCONS_00041688|Name=TCONS_00041688|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0002972:55..1117+ (Clytia hemisphaerica)
TTGAAGAAAAGTCTGTTGGGAAACTGCGACGAACAAGATGAATTTCAACA
AATGTTAGAGGAGCGCTGGATGCCGAAAAGAACCAGAACGGAGAAGCGAA
GAGACAGAAAATCATTTCTTGCGTCACCAGCTACCCCTATCCGATTCTCA
AAACGTGGTGTCATCAAGAAGACGGAAAAGTGTAGGTGCCAGATTTGCCA
TAAAGCGTATGAAAGAGAGTTACCAGAGTTTGAAATGCGTCCAGAAGATC
ATAATGGTTCAATCCCTTACAAAACCTGTCCACCGCAGCTAAAGATGAAA
GAAGACATAAAATTGCATTTGAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025613XLOC_025613Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041688-proteinTCONS_00041688-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041688-exon-sc0002972-1491911889:55..381TCONS_00041688-exon-sc0002972-1491911889:55..381Clytia hemisphaericaexon
TCONS_00041688-exon-sc0002972-1510915933:55..381TCONS_00041688-exon-sc0002972-1510915933:55..381Clytia hemisphaericaexon
TCONS_00041688-exon-sc0002972-1575043694:55..381TCONS_00041688-exon-sc0002972-1575043694:55..381Clytia hemisphaericaexon
TCONS_00041688-exon-sc0002972-1491911889:673..1117TCONS_00041688-exon-sc0002972-1491911889:673..1117Clytia hemisphaericaexon
TCONS_00041688-exon-sc0002972-1510915933:673..1117TCONS_00041688-exon-sc0002972-1510915933:673..1117Clytia hemisphaericaexon
TCONS_00041688-exon-sc0002972-1575043694:673..1117TCONS_00041688-exon-sc0002972-1575043694:673..1117Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002972supercontigsc0002972:55..1117 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.50988	0.470066	0.324066	0.379233	0.117008	0.844219	0.0686913	0.171127	0.251458	0.101496	0.0357823	0.0383999	0.094611	0	0	0	0	0	0	0	0.847917	0.122945	0	0	0.0445727	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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