TCONS_00041685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041685
Unique NameTCONS_00041685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1054

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041685 ID=TCONS_00041685|Name=TCONS_00041685|organism=Clytia hemisphaerica|type=transcript|length=1054bp
ctgccCTGGTAAATCAACTCGGGTTCAATTTCGGGTGTATCTGGTTCACC
CGACCTTAGCtgaaattgctatttttggaaGTCCGGTTCGTTTCCAGTAA
ATCGGGTAAACCCGAATTCACGGGTTGTTCAGGTTGTTGTTTTTTCGAGT
ATTTCGGGTTTACCTTAAAAAGTCGGGAAACCCAGGTTAGCGCGCGCCTG
CGCACCGAGCACTTACCTGAAGAACTCGGGTTATTGGACGATTTTGAGTG
GTCCTTCGCgtccgcaaaaatatttttttcacgaTCGAGAATTTAGAGCg
cgctttttttctttctgcgAGAGAGTTCAAGATGGAAGGTCACGTCACTT
AGTACTTCTTATTTATAATTTACTTTGACAACTGGATGAAGAAAATCGCC
TACAATTTTCCAAAGGCAATGACTATGACtggatgaagaaaaaaagGTTC
AACCCCAACAAGAGCTAAAATGCAcaaagaattcaaaattgaCAATTCAC
TCAGATTACACCGCAAGTCAAACATGGCTCTTCCAACCATAGTACCAAct
gaatcaaaattcaaaagctgaTGAAAATTCTTCCCCATTTAACAAATGGT
GACAGCTTCTTGTATAATTTGTTCCAAACAGTTGTTATTCCTGGTTATTC
ATGTCAAATGAGTGCAACTGTAATCTGCTTTTGAACTGGAACCTCTTATA
CATTCGATGGGACATTGTATgtatcaaaaattaattaaagaaCAATCatg
taaaagtaattttttcattCTATGAAATGTGTTAAAGTAGACAAATTATT
TACAATTTATGAATTTAGAATTTATATcaatttactttcattttatacta
tattaattttatcaaaaattttgaaggatAACCTTTCTTGACACTGATTT
AAGGAAATCAATTTTCATAAGAGATTCTCATTTTCGCTGACTTTTGTCAG
TTCCAAGtcacatttttaaacattattattattatattttaaagtaatat
cgcgttggaaagataattttgaacaGATTGATTTGAGTTCGCTAGGTTCG
TTGC
Run BLAST on NCBI

transcript from alignment at sc0002971:8740..14356-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041685 ID=TCONS_00041685|Name=TCONS_00041685|organism=Clytia hemisphaerica|type=transcript|length=5617bp|location=Sequence derived from alignment at sc0002971:8740..14356- (Clytia hemisphaerica)
CTGCCCTGGTAAATCAACTCGGGTTCAATTTCGGGTGTATCTGGTTCACC
CGACCTTAGCTGAAATTGCTATTTTTGGAAGTCCGGTTCGTTTCCAGTAA
ATCGGGTAAACCCGAATTCACGGGTTGTTCAGGTTGTTGTTTTTTCGAGT
ATTTCGGGTTTACCTTAAAAAGTCGGGAAACCCAGGTTAGCGCGCGCCTG
CGCACCGAGCACTTACCTGAAGAACTCGGGTTATTGGACGATTTTGAGTG
GTCCTTCGCGTCCGCAAAAATATTTTTTTCACGATCGAGAATTTAGAGCG
CGCTTTTTTTCTTTCTGCGAGAGAGTTCAAGATGGAAGGTCACGTCACTT
AGTACTTCTTATTTATAATTTACTTTGACAACTGGATGAAGAAAATCGCC
TACAATTTTCCAAAGGCAATGACTATGACTGGATGAAGAAAAAAAGGTAT
GCTTTTATCATTCTTTATTTTCTTAATAAATTGACAGGGCAGGGGAAGTT
GGTTTGATTCATGGTTCTTCTGATCAATCTCTTTTCTCAGCCTCAGAGTG
TTCTTTGAACTTAAGTGTCAAAAATACATCTCAGTTATATTATTTATCTT
TGCAAGTAAGTCTATAAAGTAATCCCAATAAATTGTTTCCTGGAAATTTA
GCTAGAGCTAGAGCTAGAATCTGAGAGTGTTTGTTTGTGGTGTATCTCAC
TAGAGTACGACACCTTCTACTTCAACAAGAACAGTCGGAATCCAGCGTGG
AAATTTGTCTACTATGACTGGTTTTTTGTCCGAACACAGTAGCATGTTTT
GTCATATTTTGTCTGAAGGCCAACCATCCCAAATAGTGCATCTCAATAAT
CAACAATTCTTTACAGGGGAGTCCCTTCGAATATTTTTTTACAATCACCT
AAACTTTTACCAATTGGTTTACCAATTTTACCAGCCGGCAACAAATAATA
TTCTCAACTTCAGTTGAGCTAGAATCTGAGAATGTCTGTCAGTATGTCCG
TGCAGTCTGTCAGTCTGTCACTGCTAAACTTTGTTTGGGGCAGTGGGCAG
GCTGGAGTCATCAAAAATGGTTGGATTCGGCTGAAATTTTGCACACTTGT
TCCTTGGGTGAATCCCTGGGAGCCCTGGGTTTTTTTGTTTTCTTTTTTCC
TTTTTTCAAATTTTTGATTTTTAGGGGCATGATCACGAGTTTTAGCTCAA
ATGAGGCTAAAAGCTTTGAGGCAGGTTGGAGACTTCAAAAATGGTCCGAT
TTAGCTGAAATTTTGCACACTTGTTCATTGGGGTGAATATTTGGGAGCAT
TTTTTTCATTTTTCAAAATATTGAGTCTTAGGGGTGTGGTCATGAGTTTT
GGCCTCAAAACGAGGCTAAAAACTCTTGGGCAGATTGGAGACTTCAAAAA
TGGTCCGATTTAGCTGAAATTTGCACACTTGTTCCTTGGGTGAATATCTG
GGAACTTTTTTTCATATTTTCAACATGTTGACTCTTAGGGGAGTGGTAAC
GAGTTTTAGCCTCAAAACGAGGCTAAGAACTTTGGGGCAGGCTTGAGACT
TCAAAAATATTCTGATTCAGCTGAAATTTTGCACACTTGTTCCTTGGGTG
AATATCTGGGGTATTTTTTCATTTTTTAAAATTTTGATTCTTAGGGGCGT
GGTCATGAGTTTTACCCTCAAAACAAGGCTGAAAACTTTAAGGCAAGCTC
GAGACTTCAAAAATGGTCCGAATTTAGCTGAGTAACAGCAAAATTCTTTG
GAACTTCTCCATTTCGATTTTTTTAGACAGGAAACATATTTTTTGGGCCG
GCCTAATAACTAGATTTTCCTTACTTACTATGCTTTAGAAACGTCTGAAT
TTAGGTTGTGGTGTGTCATTCAGGTAGTTAGATATTTTTTTTTACTTATT
ATATAGGTTCAGAAGGGANATATTTTTTGGGCCGGCCTAATAACTAGATT
TTCCTTACTTACTATGCTTTAGAAACGTCTGAAATTAGGTTGTGGTGTGT
CATTCAGGTAGTTAGATATTTTTTTTTTACTTATATAGGTTCAGAAGGGA
ATAACTGACAGTAACTGATAGTTTTTGGATGGGTGTAGCTCAAGAAAGAG
AATCCAATAAAGCATGCGTACCCTGCTTCCCTCACTCAGGAAAGAACAAT
ATAAAATGAAAAATATTTTTTGATATTCATTTCTTTTTGACAGGTTCAAC
CCCAACAAGAGCTAAAATGCACAAAGAATTCAAAATTGACAATTCACTCA
GATTACACCGCAAGTCAAGTAAGTACCCAATATCTGTTTAACTATTCAGA
TGTTGAAAGATGCCTGTTAAACAGATGGCCGAACTGTAAAAATCACAAAT
ATTTGGTCTGTATAGCTCAGTACATTGAAGGCTGTGAACAAGAATTTGTA
GCCTTCCGTAAATTCTTAAAAAAGCCATTGCTTGAGATTTAAAATAGAGT
TTGCGGTAACAATTCAGTAATGAGAAATTCTAATATTTCTTTAGACATGG
CTCTTCCAACCATAGTACCAACTGAATCAAAATTCAAAAGCTGATGAAAA
TTCTTCCCCATTTAACAAGTAAGTGTTATTTTTCAATGCGAAGATATTTA
GGCGGATGAACAGGCCAACTATATCATGATATATTCNATTTTTCAATACG
AAGATATTTGGGCGGATGAACAGGCCAACTATATGATATATTCCAGTATA
CTATTTTTTAGGGAAGCCATTTCAAGTTCTGAGGGTTTGAAATTTTTGTT
GAAGGACTCCCCAGGGCACTCAGGCAAGAGGGGGGGTGTGTCGCAGACCA
GAGTCCCTTTTATAAGTAAAGAAATACTTTAATGGGATAAAATTTCGCGG
TTNTTTCAAGTTCTGAGGGTTTGAAATTTTTGTTGAAGGACTCCCCAGGG
CACTCAGGCAAGAGGGGGATGTGTCGCAGACCAGAGTCTCTTTTATAAGT
AAAGAAATACTTTAAGGGGATAGAATTTTGCGGTCGGCACTATTGGGTGG
CAATATTTTCACGATATTGTATCTTTATACTGTCAAATCATGCATATTGG
TTGTTGAAATACACATTATTTGCGCTTTTTTCATGCAAGTAACCATTCAA
AAAGTATTTATTTGACATATTTTGAGTTTTGATTAGAAATATTTCGCGGA
TGGGGCCCTTCCAAATTTCCATTGGGATTAAATTTCGCGGATTTTCGCGG
ATGACACCCAAATCCGCGAAATTTAATCCCTGCGAAAGTTTATCCCATTA
AAGTACTTGGGATATTTTAAAATTCACTAAATTTTTGAAATCAGCTAAAA
ATTGTCTAGGGTCCATTTTTGAGCACCAGTGACACGCCAGTGACAGTACC
CCTCCCCAGGGAAATTCAGGCATTAAATGTATGCAATAATGGACAACGCT
TCAAAACCTTACTGAATTTCCATGACATCATTATTTATCATTAATTTTTA
AAGGGGCAATCCGCCACCACATTGCGCAGTTTGTTTTTGTTTTTATTTGC
CTTATTTATTCAGACAAAATCACACGGATTTACCTTGATGTTACGGGCAT
GTTTTTGAGTAATCAAGACACGAATAATTCAGATCAAAATACAAGATGGA
CGAAAATTCACTCTTGGTTTTTTAAAAGTTATAACTCTTTTCTGACAAAC
AAAAAACATGCAATTTTCATCTAATTGGCGACCAATAATTACATGAAATG
TGAGGCTAACACTTCAACTGTAATCATCAGTAATTTCAAGAGTTTTTCAT
CATTGATTACAAAGATATCCATGGATTATCTTATCCGAATACCAAACCAA
CCACCTTAAAGATTTCAGAGACATTTGCTTGACATGAAGAAAACGCTACA
TCCCCATAACTTTGGACATTAAATGATTGGCAAAATGGTATTAACATTCT
ATTGAGATGTGAAACTGGTTCAAGTTGAAGAATTGATGAGAAAAATGGGC
AGTACGAGAAATATTTTTGCTTTGGAATACAAACTCTTATATGGACAATA
CCTCTGGAACAAGTTATATGGGATTTGTTTACCGAGTGACCCCGAAACAA
AGTCTTTAATGCTTGGTTCTTACATTCATGAGGTCAGAGGTTTTGTGGAT
TTTCTAAACTTTTGAAACTTATTGTGTGATTGTTTTGGTTGTTTTCCTGA
CTAAAGACACTTTTGAATGTGTGATTGTTTTCCCTGACTAGAGATACTGT
GAGCGTGTATTTGATAAACATATTGAATCTTGGCTTGGAGTATATTTTTG
AATGTTTTAATGGCGACGTCATTTCTTGTTTGGATTGTTGTAGTGTTATC
TTTTAGTGCTCCAATGTAATAAATTATCAATTTCATTTTTTATCAAATTA
GTTCGTGGTTATTTCATAGAATTTCAGTAGTGTTTATGTGATAGGTTGTC
CAAGAAAGCATTGTTTCGAGGTTTCCATGTTTCGTCAAAACGTGTCAAAG
CCTGTCAAAGAGATTTATAAGTATTTTCTTTCCTTAACTTTATATAATTT
TAAAGAGAAGACATAGGAGCCTTTGTTTTTTGGTGTTATCATTACAAAGC
TTTGAGGAACCTTTTTTGGACTAAAAATTCTAAATTTATAATCTAAAATT
TTCATAGATTTTCTTGTAACATTTCAGACACTTGTATGTTTCAATAAAAA
ATAACATCTTTACATATCTACTTATAAAAATTATCATGTGCTCTTTGTTT
GTCAACCCATTTCTTTTTTACCTATAAATCAAATCATATTGAATTGCTAC
TGCCAAGGGAAATTTAGATAAATTTAGATAACTAGGAGTAATTATAAAAA
TCTTATACGAAGCATTCAGCTGAAGTGTGCCTTCCATCAGTTCTCATAAG
TTTGTTTTGATTTTTTTCCCGTCAAAAGTCACGTGATATTCTTATCTCGA
TCACTCCGCCTCAACTGGAAATTCCCCTATGCACCCTAAAAGTAATAGAG
TTTTAGAAAAACAATAACAAACCGTGTTATGTGGTGGCGGATTGCCCCTT
TAAGACTTGCAGTGCATTTTTTTGCTTGTNAGAAAGTCAATGGAGTTTCG
TGACAGCGACAAATTCGGTTAACTCAACTCAAATTTGCGATGTTGTTTTC
ACATTTCTTTTGCAATATGAATCTTCAGTCTCAAACATGCTCCCCGTGTC
TATATTAGATGGTGACAGCTTCTTGTATAATTTGTTCCAAACAGTTGTTA
TTCCTGGTTATTCATGTCAAATGAGTGCAACTGTAATCTGCTTTTGAACT
GGAACCTCTTATACATTCGATGGGACATTGTATGTATCAAAAATTAATTA
AAGAACAATCATGTAAAAGTAATTTTTTCATTCTATGAAATGTGTTAAAG
TAGACAAATTATTTACAATTTATGAATTTAGAATTTATATCAATTTACTT
TCATTTTATACTATATTAATTTTATCAAAAATTTTGAAGGATAACCTTTC
TTGACACTGATTTAAGGAAATCAATTTTCATAAGAGATTCTCATTTTCGC
TGACTTTTGTCAGTTCCAAGTCACATTTTTAAACATTATTATTATTATAT
TTTAAAGTAATATCGCGTTGGAAAGATAATTTTGAACAGATTGATTTGAG
TTCGCTAGGTTCGTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025611XLOC_025611Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041685-exon-sc0002971-1575043694:13911..14356TCONS_00041685-exon-sc0002971-1575043694:13911..14356Clytia hemisphaericaexon
TCONS_00041685-exon-sc0002971-1575043694:12089..12163TCONS_00041685-exon-sc0002971-1575043694:12089..12163Clytia hemisphaericaexon
TCONS_00041685-exon-sc0002971-1575043694:11789..11862TCONS_00041685-exon-sc0002971-1575043694:11789..11862Clytia hemisphaericaexon
TCONS_00041685-exon-sc0002971-1575043694:8740..9198TCONS_00041685-exon-sc0002971-1575043694:8740..9198Clytia hemisphaericaexon
TCONS_00041685-exon-sc0002971-1510915933:13911..14356TCONS_00041685-exon-sc0002971-1510915933:13911..14356Clytia hemisphaericaexon
TCONS_00041685-exon-sc0002971-1510915933:12089..12163TCONS_00041685-exon-sc0002971-1510915933:12089..12163Clytia hemisphaericaexon
TCONS_00041685-exon-sc0002971-1510915933:11789..11862TCONS_00041685-exon-sc0002971-1510915933:11789..11862Clytia hemisphaericaexon
TCONS_00041685-exon-sc0002971-1510915933:8740..9198TCONS_00041685-exon-sc0002971-1510915933:8740..9198Clytia hemisphaericaexon
TCONS_00041685-exon-sc0002971-1491911889:13911..14356TCONS_00041685-exon-sc0002971-1491911889:13911..14356Clytia hemisphaericaexon
TCONS_00041685-exon-sc0002971-1491911889:12089..12163TCONS_00041685-exon-sc0002971-1491911889:12089..12163Clytia hemisphaericaexon
TCONS_00041685-exon-sc0002971-1491911889:11789..11862TCONS_00041685-exon-sc0002971-1491911889:11789..11862Clytia hemisphaericaexon
TCONS_00041685-exon-sc0002971-1491911889:8740..9198TCONS_00041685-exon-sc0002971-1491911889:8740..9198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002971supercontigsc0002971:8740..14356 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.61197	1.3633	1.42348	0.582381	44.0429	43.7072	11.7564	13.4607	5.56346	6.45947	4.38757	3.5158	4.9829	4.14892	4.28455	4.65533	5.19103	6.03143	2.68065	4.30339	5.83573	7.83548	3.03883	4.08895	2.43541	4.7053	11.2376	5.26487	4.77236	4.18314
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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