TCONS_00041684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041684
Unique NameTCONS_00041684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041684 ID=TCONS_00041684|Name=TCONS_00041684|organism=Clytia hemisphaerica|type=transcript|length=432bp
CGATGTTATCTAAAAACACTTGACCAAAGCCATGCAATAAATTCATTTCA
AGCACGAAATAACAAGAAAGATAACCAACCTTTAAAGCATCTAATAATCT
CTCGAATATTATAAAAACAAGTTTCAAATAATCTTTTGTTTGCTCAAGTT
TCTCTAACTCCTCTTTTGGTGTGTTTTCCAATACGAAAAGATGAACAGTC
TTCAGGATATACGAAGATAATTTCCGTTCACTTTTATCATCAATAAGACC
ATTACTTTCTAAAGTAAAAATTAGTTTCGCTAAGAGGTAGCTCTTCTTTT
GAAAGGGACTTTGCTTAAGCGCCAAGATGGCTTCAGCTTCAGAGAAAGAC
AACCGCCATGTATTTTTTTCATCTCCAATCGCCTTTCGCACCAATGTACA
TCCAACCTCGCGAATTTCACATACAGTTTCTA
Run BLAST on NCBI

protein sequence of TCONS_00041684-protein

>TCONS_00041684-protein ID=TCONS_00041684-protein|Name=TCONS_00041684-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
ETVCEIREVGCTLVRKAIGDEKNTWRLSFSEAEAILALKQSPFQKKSYLL
AKLIFTLESNGLIDDKSERKLSSYILKTVHLFVLENTPKEELEKLEQTKD
YLKLVFIIFERLLDALKVGYLSCYFVLEMNLLHGFGQVFLDNI
Run BLAST on NCBI

transcript from alignment at sc0002968:7636..8067

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041684 ID=TCONS_00041684|Name=TCONS_00041684|organism=Clytia hemisphaerica|type=transcript|length=432bp|location=Sequence derived from alignment at sc0002968:7636..8067 (Clytia hemisphaerica)
TAGAAACTGTATGTGAAATTCGCGAGGTTGGATGTACATTGGTGCGAAAG
GCGATTGGAGATGAAAAAAATACATGGCGGTTGTCTTTCTCTGAAGCTGA
AGCCATCTTGGCGCTTAAGCAAAGTCCCTTTCAAAAGAAGAGCTACCTCT
TAGCGAAACTAATTTTTACTTTAGAAAGTAATGGTCTTATTGATGATAAA
AGTGAACGGAAATTATCTTCGTATATCCTGAAGACTGTTCATCTTTTCGT
ATTGGAAAACACACCAAAAGAGGAGTTAGAGAAACTTGAGCAAACAAAAG
ATTATTTGAAACTTGTTTTTATAATATTCGAGAGATTATTAGATGCTTTA
AAGGTTGGTTATCTTTCTTGTTATTTCGTGCTTGAAATGAATTTATTGCA
TGGCTTTGGTCAAGTGTTTTTAGATAACATCG

Coding sequence (CDS) from alignment at sc0002968:7636..8067

>TCONS_00041684 ID=TCONS_00041684|Name=TCONS_00041684|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at sc0002968:7636..8067 (Clytia hemisphaerica)
GAAACTGTATGTGAAATTCGCGAGGTTGGATGTACATTGGTGCGAAAGGC
GATTGGAGATGAAAAAAATACATGGCGGTTGTCTTTCTCTGAAGCTGAAG
CCATCTTGGCGCTTAAGCAAAGTCCCTTTCAAAAGAAGAGCTACCTCTTA
GCGAAACTAATTTTTACTTTAGAAAGTAATGGTCTTATTGATGATAAAAG
TGAACGGAAATTATCTTCGTATATCCTGAAGACTGTTCATCTTTTCGTAT
TGGAAAACACACCAAAAGAGGAGTTAGAGAAACTTGAGCAAACAAAAGAT
TATTTGAAACTTGTTTTTATAATATTCGAGAGATTATTAGATGCTTTAAA
GGTTGGTTATCTTTCTTGTTATTTCGTGCTTGAAATGAATTTATTGCATG
GCTTTGGTCAAGTGTTTTTAGATAACATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025610XLOC_025610Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041684-proteinTCONS_00041684-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041684-exon-sc0002968-1491911889:7636..8067TCONS_00041684-exon-sc0002968-1491911889:7636..8067Clytia hemisphaericaexon
TCONS_00041684-exon-sc0002968-1510915933:7636..8067TCONS_00041684-exon-sc0002968-1510915933:7636..8067Clytia hemisphaericaexon
TCONS_00041684-exon-sc0002968-1575043694:7636..8067TCONS_00041684-exon-sc0002968-1575043694:7636..8067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002968supercontigsc0002968:7636..8067 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	1.00696	0	0.132983	0.558406	0	0.18807	0.788391	0.83629	0.733753	0.757825	0	0.16584	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024810Mab-21_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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