TCONS_00041682 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041682
Unique NameTCONS_00041682
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041682 ID=TCONS_00041682|Name=TCONS_00041682|organism=Clytia hemisphaerica|type=transcript|length=1479bp
CAAGGATTTTTCTGCTAAGCCCTGGAACTACAGTACCCATTTTGGAGAAT
TTATTCAACCGAAGGAAAATGTTTCACTTTCCTTGAAAGATTCACGATTT
AATAGACTTCCTGTGTGCTGTATAAGGTTGAATTATTTGATTGATGATAT
TGCTGCCTATCTTGAGAAGTACTCCGATATCCTTAACAACATAGCCATCA
TCGATAGAAGCTTTGTTCAAATGGAAATCTTGAAACCAATATTTGCTGCT
ATTGCTTTACTCGGTATTTATTAAcagttatttgatttttttctaccaGA
TGGCTCATTTGACAAATTTAGGTACATTAAATCTGTTTTACAGAAAACAC
ACTTTGTATGAAAATGTTATATCATTAAAAGTAATTCATtcactattttt
caaaaattgcctTTTCAGGTATACACTTGACAGTACCATACCATTCACTT
CTCATGACGAAAGAAACAAACTACTCAGCtcttttatcaagcttttccca
ACTTTACAAGGACTTGACAGAAACTGATGCATCACTTTTTCTTTCACTTG
AGCGTGTGTGCAGTTTTGCATCTGAAGACATCTTCCAGAGCTCCTTCCCA
AAGAAGCAGTTCTGTCTACACTCACTTGAAGAGACAATTACGAAGTATCC
AAAGGAAATCGAAAGGTTCGTTCGTATTGCACTGGAAAAGTTTGCAGATG
GGTTTCACCACCAAAAGGGTGCTATTTTTGGGTTTGGTAAGGATGCAGAT
CAGAAAACAAAtgttttcaaagtttcaaaagcaACAACAGACCAATTAGC
AAAGCTAGACGCACATGTGGATGTCCATAACATTGGCGAGGAGAGAAACG
TTGGTAGCTTCAATTATGCCTGTACTGCCCGAGTTGGTTCAAGAAATTTG
GAATCAGCGTCTCGAAAAGTCGTCATGAAATCTTCTGCAGATGTTTTGAA
GAGAGTTGTACCAGGAGAATTTAGAAAGTACCAGTCTCAATCAAAAGAGA
TTGAATCAATCAAGGTAAATTGGAACACGAAGATGAGACAGACGCAGGAG
AAAGGTTACAGGGAAAAAGACCTGCTAAATGCCAAAAACGAGGAGAAGCG
CCTGAAGGATTTGCATTTTTTGAAGAGTCAACAAATACCAGGGCCATTTA
CATGTGTTATAGAATCAGTTGAAGACTCCTTAGTACGAGTTTCTTACTTC
ACACGTAGAGACAAATCTGGGAGCCAGTGGACATTTCCGGAAGAAGCCGA
CATCCAGGATACAAAATTGGATCAAATTATTTGTAAAGTTGATCGAGTTG
CATATCAATGCACCGTGAGGATTAGATGTCTCATTGACAAAAGTGTTGCA
GATGGCATCACAGACAAAATGAatagaatttttaaagtttaaaaacattc
aGTTGCTTTGAAATCAGTAAAACATATATAACACATTATGTATCTACTTG
AGTACAATtacatattttctaaaactaac
Run BLAST on NCBI

protein sequence of TCONS_00041682-protein

>TCONS_00041682-protein ID=TCONS_00041682-protein|Name=TCONS_00041682-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MTKETNYSALLSSFSQLYKDLTETDASLFLSLERVCSFASEDIFQSSFPK
KQFCLHSLEETITKYPKEIERFVRIALEKFADGFHHQKGAIFGFGKDADQ
KTNVFKVSKATTDQLAKLDAHVDVHNIGEERNVGSFNYACTARVGSRNLE
SASRKVVMKSSADVLKRVVPGEFRKYQSQSKEIESIKVNWNTKMRQTQEK
GYREKDLLNAKNEEKRLKDLHFLKSQQIPGPFTCVIESVEDSLVRVSYFT
RRDKSGSQWTFPEEADIQDTKLDQIICKVDRVAYQCTVRIRCLIDKSVAD
GITDKMNRIFKV
Run BLAST on NCBI

transcript from alignment at sc0002967:7912..10126-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041682 ID=TCONS_00041682|Name=TCONS_00041682|organism=Clytia hemisphaerica|type=transcript|length=2215bp|location=Sequence derived from alignment at sc0002967:7912..10126- (Clytia hemisphaerica)
CAAGGATTTTTCTGCTAAGCCCTGGAACTACAGTACCCATTTTGGAGAAT
TTATTCAACCGAAGGAAAATGTTTCACTTTCCTTGAAAGATTCACGATTT
AATAGACTTCCTGTGTGCTGTATAAGGTTGAATTATTTGATTGATGATAT
TGCTGCCTATCTTGAGAAGTACTCCGATATCCTTAACAACATAGCCATCA
TCGATAGAAGCTTTGTTCAAATGGAAATCTTGAAACCAATATTTGCTGCT
ATTGCTTTACTCGGTATTTATTAACAGTTATTTGATTTTTTTCTACCAGA
TGGCTCATTTGACAAATTTAGGTACATTAAATCTGTTTTACAGAAAACAC
ACTTTGTATGAAAATGTTATATCATTAAAAGTAATTCATTCACTATTTTT
CAAAAATTGCCTTTTCAGGTATACACTTGACAGTACCATACCATTCACTT
CTCATGACGAAAGAAACAAACTACTCAGCTCTTTTATCAAGCTTTTCCCA
ACTTTACAAGGACTTGACAGAAACTGATGCATCACTTTTTCTTTCACTTG
AGCGTGTGTGCAGTTTTGCATCTGAAGACATCTTCCAGAGCTCCTTCCCA
AAGAAGCAGTTCTGTCTACACTCACTTGAAGAGACAATTACGAAGTATCC
AAAGGAAATCGAAAGGTTCGTTCGTATTGCACTGGAAAAGTTTGCAGATG
GGTTTCACCACCAAAAGGGTGCTATTTTTGGGTTTGGTAAGGATGCAGAT
CAGAAAACAAATGTTTTCAAAGTTTCAAAAGCAACAACAGACCAATTAGC
AAAGCTAGACGCACATGTGGATGTCCATAACATTGGCGAGGAGAGAAACG
TTGGTAGCTTCAATTATGCCTGTACTGCCCGAGTTGGTTCAAGAAATTTG
GAATCAGCGTCTCGAAAAGTCGTCATGAAATCTTCTGCAGATGTTTTGAA
GAGAGTTGTACCAGGAGAATTTAGAAAGTACCAGTCTCAATCAAAAGAGA
TTGAATCAATCAAGGTAAATTGGAACACGAAGATGAGACAGACGCAGGAG
AAAGGTTACAGGGAAAAAGACCTGCTAAATGCCAAAAACGAGGAGAAGCG
CCTGAAGGATTTGCATTTTTTGAAGAGTCAACAAATACCAGGGCCATTTA
CATGTAAGGAAGATGTTGAGAATTTCATGAATTCCAGTAAGGAGAGCACA
GAAAAAGTTGATCGTATGTATAAGGAGGTGAGATATGCAAAGGCTAGTTC
AGGATTTGGAGACAACAAATCAATGTTTAGATTGAGGCAAAATGGCAAGA
GGTTGAGTTCAAGGGATTATCAAGATGGGTTAGAAAGATATTTTGAAGGT
GCCAAAGCAGCTACCAGTATCTCAATGGCAGATCTTAAGAGCATCCTCAG
TGCTTTGGAAGGTAAGAGAAAAAGAGTTTGTTGATTGTTTTAAGAGGCAA
TTTCAAAGTTTTAACAAGGATGTAAAGCAGGGTCTCTTAGTTTTTCTCCC
AGCATTTTGATAAAAAACTTATTGGAAAGCCCGGGAAAGCTTGTGATAGA
ATGAATAGTTGAGTTTGACCTAAAAATAGTCAAGTTTTCCACCTTTGTGT
TTTGTTTATTTGAGACAACGTTTGGTTCAAAGCAAATCGAAGGGTCCAAT
GATGCAGAAGAAATGAATCCTGAAGTTAACAAAAAGTCTGTTAGAAATAG
CAAACAACAGAATGACAACAAGTTTAGTTCAGGGATGCACGTGGCAGCAG
CTTGGCTAAAGGATGATAGTACTGAATATACATGGTATTTAGGTGAGTTC
AGAAATATGGAGCTTTGGAAAGATTCCCCTAGATTCCCCTTATTTATGAT
TAATTTGCAAATTAAACAATCTTTTTCTCTATTTATCAGGTGTTATAGAA
TCAGTTGAAGACTCCTTAGTACGAGTTTCTTACTTCACACGTAGAGACAA
ATCTGGGAGCCAGTGGACATTTCCGGAAGAAGCCGACATCCAGGATACAA
AATTGGATCAAATTATTTGTAAAGTTGATCGAGTTGCATATCAATGCACC
GTGAGGATTAGATGTCTCATTGACAAAAGTGTTGCAGATGGCATCACAGA
CAAAATGAATAGAATTTTTAAAGTTTAAAAACATTCAGTTGCTTTGAAAT
CAGTAAAACATATATAACACATTATGTATCTACTTGAGTACAATTACATA
TTTTCTAAAACTAAC

Coding sequence (CDS) from alignment at sc0002967:7912..10126-

>TCONS_00041682 ID=TCONS_00041682|Name=TCONS_00041682|organism=Clytia hemisphaerica|type=CDS|length=1878bp|location=Sequence derived from alignment at sc0002967:7912..10126- (Clytia hemisphaerica)
GTGTTATAGAATCAGTTGAAGACTCCTTAGTACGAGTTTCTTACTTCACA
CGTAGAGACAAATCTGGGAGCCAGTGGACATTTCCGGAAGAAGCCGACAT
CCAGGATACAAAATTGGATCAAATTATTTGTAAAGTTGATCGAGTTGCAT
ATCAATGCACCGTGAGGATTAGATGTCTCATTGACAAAAGTGTTGCAGAT
GGCATCACAGACAAAATGAATAGAATTTTTAAAGTTTAAATGACGAAAGA
AACAAACTACTCAGCTCTTTTATCAAGCTTTTCCCAACTTTACAAGGACT
TGACAGAAACTGATGCATCACTTTTTCTTTCACTTGAGCGTGTGTGCAGT
TTTGCATCTGAAGACATCTTCCAGAGCTCCTTCCCAAAGAAGCAGTTCTG
TCTACACTCACTTGAAGAGACAATTACGAAGTATCCAAAGGAAATCGAAA
GGTTCGTTCGTATTGCACTGGAAAAGTTTGCAGATGGGTTTCACCACCAA
AAGGGTGCTATTTTTGGGTTTGGTAAGGATGCAGATCAGAAAACAAATGT
TTTCAAAGTTTCAAAAGCAACAACAGACCAATTAGCAAAGCTAGACGCAC
ATGTGGATGTCCATAACATTGGCGAGGAGAGAAACGTTGGTAGCTTCAAT
TATGCCTGTACTGCCCGAGTTGGTTCAAGAAATTTGGAATCAGCGTCTCG
AAAAGTCGTCATGAAATCTTCTGCAGATGTTTTGAAGAGAGTTGTACCAG
GAGAATTTAGAAAGTACCAGTCTCAATCAAAAGAGATTGAATCAATCAAG
GTAAATTGGAACACGAAGATGAGACAGACGCAGGAGAAAGGTTACAGGGA
AAAAGACCTGCTAAATGCCAAAAACGAGGAGAAGCGCCTGAAGGATTTGC
ATTTTTTGAAGAGTCAACAAATACCAGGGCCATTTACATGTGTTATAGAA
TCAGTTGAAGACTCCTTAGTACGAGTTTCTTACTTCACACGTAGAGACAA
ATCTGGGAGCCAGTGGACATTTCCGGAAGAAGCCGACATCCAGGATACAA
AATTGGATCAAATTATTTGTAAAGTTGATCGAGTTGCATATCAATGCACC
GTGAGGATTAGATGTCTCATTGACAAAAGTGTTGCAGATGGCATCACAGA
CAAAATGAATAGAATTTTTAAAGTTTAAATGACGAAAGAAACAAACTACT
CAGCTCTTTTATCAAGCTTTTCCCAACTTTACAAGGACTTGACAGAAACT
GATGCATCACTTTTTCTTTCACTTGAGCGTGTGTGCAGTTTTGCATCTGA
AGACATCTTCCAGAGCTCCTTCCCAAAGAAGCAGTTCTGTCTACACTCAC
TTGAAGAGACAATTACGAAGTATCCAAAGGAAATCGAAAGGTTCGTTCGT
ATTGCACTGGAAAAGTTTGCAGATGGGTTTCACCACCAAAAGGGTGCTAT
TTTTGGGTTTGGTAAGGATGCAGATCAGAAAACAAATGTTTTCAAAGTTT
CAAAAGCAACAACAGACCAATTAGCAAAGCTAGACGCACATGTGGATGTC
CATAACATTGGCGAGGAGAGAAACGTTGGTAGCTTCAATTATGCCTGTAC
TGCCCGAGTTGGTTCAAGAAATTTGGAATCAGCGTCTCGAAAAGTCGTCA
TGAAATCTTCTGCAGATGTTTTGAAGAGAGTTGTACCAGGAGAATTTAGA
AAGTACCAGTCTCAATCAAAAGAGATTGAATCAATCAAGGTAAATTGGAA
CACGAAGATGAGACAGACGCAGGAGAAAGGTTACAGGGAAAAAGACCTGC
TAAATGCCAAAAACGAGGAGAAGCGCCTGAAGGATTTGCATTTTTTGAAG
AGTCAACAAATACCAGGGCCATTTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025608XLOC_025608Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041682-proteinTCONS_00041682-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041682-exon-sc0002967-1575043694:8974..10126TCONS_00041682-exon-sc0002967-1575043694:8974..10126Clytia hemisphaericaexon
TCONS_00041682-exon-sc0002967-1575043694:7912..8237TCONS_00041682-exon-sc0002967-1575043694:7912..8237Clytia hemisphaericaexon
TCONS_00041682-exon-sc0002967-1510915933:8974..10126TCONS_00041682-exon-sc0002967-1510915933:8974..10126Clytia hemisphaericaexon
TCONS_00041682-exon-sc0002967-1510915933:7912..8237TCONS_00041682-exon-sc0002967-1510915933:7912..8237Clytia hemisphaericaexon
TCONS_00041682-exon-sc0002967-1491911889:8974..10126TCONS_00041682-exon-sc0002967-1491911889:8974..10126Clytia hemisphaericaexon
TCONS_00041682-exon-sc0002967-1491911889:7912..8237TCONS_00041682-exon-sc0002967-1491911889:7912..8237Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002967supercontigsc0002967:7912..10126 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.111741	0.108965	0.284667	0.185668	0.791117	0.625151	0.826048	1.07595	0.329567	0.291587	0.566043	0.31628	0.31584	0.115766	0.0475876	0.0851147	0	0.0859779	0.0296958	0.062149	0.162056	0.0395227	0.09609	0.0291199	0.719828	0.615661	0.153219	0.0817597	0	0.0315901
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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