TCONS_00041670 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041670
Unique NameTCONS_00041670
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length608

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041670 ID=TCONS_00041670|Name=TCONS_00041670|organism=Clytia hemisphaerica|type=transcript|length=608bp
AGCAGCTTTGTTAGGGTTGATATCGTTAAGGAGTTTCCGAACACCAGGTT
CTGTGATATTAATTTCTGGCATGGGTGTATTCGCTTGACCCTGTAGGGGT
GGGATTCGACTGTCAGGAATGGAGAAGACATTTGAAAACTGTTTGTTGAG
GATGTTTGCTTTCTTGGTGTTATCAATGTGTAAGCTGCCATTGTCTCACA
GGGGTGCTACTCCATCATTTTCACATTTACGGGATTTTATGAATCGAAAC
AGTTTCTTAGGATTATTTACCCCATCTGGGCTTACACAGTTTTTGGCAAA
GTTATTGAATGCTGATTTGCAAGCTTTCCTGCATTCGTTTGTTAGCTTTT
TGAAGCGATCCCAGTCTGTaggatttgatgattttttggcTCGCTTGTAG
GCCCTCTTCTTTCGCCGAGATAACCTTTTACATTTCTGTGTTATCCAAGG
TTGAGAATAACGACTTGATGTGTATTTTGAAGGGACGGATAGCATGGCAT
TTTCGGTAAGAGCTTTGAGGGCTTTCCACATGTCATTAACAGGGGATTCA
GAGTTGTAAGTAGTGGTAAACTCAGCAATTTCAGCAGAGATTTGATCTTT
GATGGACC
Run BLAST on NCBI

protein sequence of TCONS_00041670-protein

>TCONS_00041670-protein ID=TCONS_00041670-protein|Name=TCONS_00041670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
SIKDQISAEIAEFTTTYNSESPVNDMWKALKALTENAMLSVPSKYTSSRY
SQPWITQKCKRLSRRKKRAYKRAKKSSNPTDWDRFKKLTNECRKACKSAF
NNFAKNCVSPDGVNNPKKLFRFIKSRKCENDGVAPL
Run BLAST on NCBI

transcript from alignment at sc0002964:6578..7185

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041670 ID=TCONS_00041670|Name=TCONS_00041670|organism=Clytia hemisphaerica|type=transcript|length=608bp|location=Sequence derived from alignment at sc0002964:6578..7185 (Clytia hemisphaerica)
GGTCCATCAAAGATCAAATCTCTGCTGAAATTGCTGAGTTTACCACTACT
TACAACTCTGAATCCCCTGTTAATGACATGTGGAAAGCCCTCAAAGCTCT
TACCGAAAATGCCATGCTATCCGTCCCTTCAAAATACACATCAAGTCGTT
ATTCTCAACCTTGGATAACACAGAAATGTAAAAGGTTATCTCGGCGAAAG
AAGAGGGCCTACAAGCGAgccaaaaaatcatcaaatcctACAGACTGGGA
TCGCTTCAAAAAGCTAACAAACGAATGCAGGAAAGCTTGCAAATCAGCAT
TCAATAACTTTGCCAAAAACTGTGTAAGCCCAGATGGGGTAAATAATCCT
AAGAAACTGTTTCGATTCATAAAATCCCGTAAATGTGAAAATGATGGAGT
AGCACCCCTGTGAGACAATGGCAGCTTACACATTGATAACACCAAGAAAG
CAAACATCCTCAACAAACAGTTTTCAAATGTCTTCTCCATTCCTGACAGT
CGAATCCCACCCCTACAGGGTCAAGCGAATACACCCATGCCAGAAATTAA
TATCACAGAACCTGGTGTTCGGAAACTCCTTAACGATATCAACCCTAACA
AAGCTGCT

Coding sequence (CDS) from alignment at sc0002964:6578..7185

>TCONS_00041670 ID=TCONS_00041670|Name=TCONS_00041670|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at sc0002964:6578..7185 (Clytia hemisphaerica)
TCCATCAAAGATCAAATCTCTGCTGAAATTGCTGAGTTTACCACTACTTA
CAACTCTGAATCCCCTGTTAATGACATGTGGAAAGCCCTCAAAGCTCTTA
CCGAAAATGCCATGCTATCCGTCCCTTCAAAATACACATCAAGTCGTTAT
TCTCAACCTTGGATAACACAGAAATGTAAAAGGTTATCTCGGCGAAAGAA
GAGGGCCTACAAGCGAgccaaaaaatcatcaaatcctACAGACTGGGATC
GCTTCAAAAAGCTAACAAACGAATGCAGGAAAGCTTGCAAATCAGCATTC
AATAACTTTGCCAAAAACTGTGTAAGCCCAGATGGGGTAAATAATCCTAA
GAAACTGTTTCGATTCATAAAATCCCGTAAATGTGAAAATGATGGAGTAG
CACCCCTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025603XLOC_025603Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041670-proteinTCONS_00041670-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041670-exon-sc0002964-1491911889:6578..7185TCONS_00041670-exon-sc0002964-1491911889:6578..7185Clytia hemisphaericaexon
TCONS_00041670-exon-sc0002964-1510915933:6578..7185TCONS_00041670-exon-sc0002964-1510915933:6578..7185Clytia hemisphaericaexon
TCONS_00041670-exon-sc0002964-1575043694:6578..7185TCONS_00041670-exon-sc0002964-1575043694:6578..7185Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002964supercontigsc0002964:6578..7185 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.51739	2.03565	4.15452	4.57912	2.4793	2.49139	1.1364	2.41005	1.05289	1.92068	1.92066	2.05691	1.18334	0.784139	0.963798	1.71509	0.723846	0.6271	0.735781	0.904483	1.25086	1.08331	0.401191	0.462219	1.17445	0.971839	1.25888	0.794307	1.62317	0.439871
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041670 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top