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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041668 ID=TCONS_00041668|Name=TCONS_00041668|organism=Clytia hemisphaerica|type=transcript|length=2116bp
TTGATTTCATTACATATGTTGGTAGCTACAAGAAGATTGGAATCAGTAGG
TCTGTAGCACGAAGTGATGATTACTGGGTGTTTATGTGTCTGGATTTTGA
TGGAGACAAGTTCGCATGTCTCTGATTTTTTGACCTGTTCTGCAATGAGT
TCTCTTTTAACAAATATGATCGCACCACCTTTGGAGTTATCTTTTATTCT
GTCATGGCGAAAGCACTTGTATTTTTCAGGTAAAAATTCATTATCCTTGA
TACAGGGATCTAAGTGGGTTTCAGATCCAATGATAACATCAATGTTATCA
TCGAATAGCGCATCTTCAAGGAGTTCTTTCTTGTCCCAGATACTACAAAA
GTTTATGCATAAGATGCGAAGTTGTTTGGCTAATAGCTCTGGTGTGTCAT
CGCTGGCATTAGAGATGTTTGAATCAGTTGAGGAGTTGAGAGTATTGTCG
AATAATGATGGGCTGATATTTTTGATACCACAGTTGCAACATTCCCAGGT
GAGATCAGGAGTTGATTCATAAGCTTGGTAGATAAGACTGTTTATTTCAA
TACAATCTTTGTGGAACCATTGGTCACACGAGTCACATGCTATTGCTCTT
TGACCCCATTTCACAGCTTTATAACACTCGCCACATGGAAATTTAATTGG
ACGAGCTGGTCCTGGGTTGGTTTCAATTTGAGCACTAAGGATCAGTAACA
AGTTGATCAGATATGTAGATTGTTTTCTGGGCTGAATTTTTGTATGGATC
ATGTTGTACGAAATAGTGAAGAACACTTCTTTGGTGAATATATCCCCATC
AGGAATGAATGTAATGTCAGTGTTGAATACATATCTGACTTTGATGTTGT
TAGGTTTCAGCCAGATTGTTGAATACAACACAATCGTCAAGAGCTTGTGT
AAATACATTGTTAAGATCAGAACAAGGACTTTTTCGCTTCAGGAAAGCGC
AGGTTGATCGCAACCCTGGTGATGCTGGCTTATTGATGGGTGTAACACAG
CATTTACCCATGAACTTTTCGCTTCAGGAAAGCGCAGGTTGATCGCAACC
CTGGTGATGCTGACTTATTGATGGGTTTTACAGCATTAACCCATGAAcca
tactttttgaaattttgtattcTATTTTGTATTCTCCTTCTTGTTGTGTT
TTctctaaaaaagaagaaaggctTCTCCCACGACACAGGTTCagccttag
actcaaatttggagtaattagtgtttctttttaattgtatttAATTGTTT
TAATCGTAGGTAAGTGGTTCTCAGGCGGATGTAttttttagccaatcaaa
tttcttCAATCAGACAAATCTCCCTGAAACCGGGAATCAAATCCATATTT
TTAGTTTGCTGTTACTCTAGCGGCTCCATATGTATTTAAAGTTCCGGCAG
ATTGTTTTTTGTAGCTGAATTGCCAGGACTATAGCCAGTCCGTTACGGAG
CCGCTAGAGTAACGGCTTCTATTGAATTCGGCAGATAAGTAAACAGATTT
TTCAGCTTTACGGAGGTGCTACGGTAGATGTTATATTGGATGGCCAATCG
TCacctttttttatttcctatctcttatcctatttttctcttttctgact
gtctgagactttgttttttattttctaactaccgtgagaggtcctaaatc
tgacaccactgcctaaatccgatggggtctttcaaagatacaaactaaaa
taaaaacaaacctttcgctgtgacgcaacgaagataccaaagtgtcaact
aaactgagagatttgatacactgaaccaattgaaccaaataacaataatt
gcttctttataacaaaacatatttttttattgcaaaatgcacaacgtcat
aaatgacaacagtagcaacagcatcataaaaagtatgATTTTCCaaaaca
cgcgaaaatataatAGAGGTCTGTGtatgaaacgttacgtaatcaagcct
ggtttttattactttacagtacactggcacttggcttgattgcgggcctt
ccgtaaataataGGGGGGATGTTAGgaataattttttaagcccatttgtc
aaaagttgcctttgggtataaaaagaagaaaaaatcatgtaaaaaCCCTG
TGGCacttttttcaag Run BLAST on NCBI protein sequence of TCONS_00041668-protein >TCONS_00041668-protein ID=TCONS_00041668-protein|Name=TCONS_00041668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
MYLHKLLTIVLYSTIWLKPNNIKVRYVFNTDITFIPDGDIFTKEVFFTIS
YNMIHTKIQPRKQSTYLINLLLILSAQIETNPGPARPIKFPCGECYKAVK
WGQRAIACDSCDQWFHKDCIEINSLIYQAYESTPDLTWECCNCGIKNISP
SLFDNTLNSSTDSNISNASDDTPELLAKQLRILCINFCSIWDKKELLEDA
LFDDNIDVIIGSETHLDPCIKDNEFLPEKYKCFRHDRIKDNSKGGAIIFV
KRELIAEQVKKSETCELVSIKIQTHKHPVIITSCYRPTDSNLLVATNICN
EI Run BLAST on NCBI transcript from alignment at sc0002964:3864..5979 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041668 ID=TCONS_00041668|Name=TCONS_00041668|organism=Clytia hemisphaerica|type=transcript|length=2116bp|location=Sequence derived from alignment at sc0002964:3864..5979 (Clytia hemisphaerica)
cttgaaaaaagtGCCACAGGGtttttacatgattttttcttctttttata
cccaaaggcaacttttgacaaatgggcttaaaaaattattcCTAACATCC
CCCCtattatttacggaaggcccgcaatcaagccaagtgccagtgtactg
taaagtaataaaaaccaggcttgattacgtaacgtttcataCACAGACCT
CTattatattttcgcgtgttttGGAAAATcatactttttatgatgctgtt
gctactgttgtcatttatgacgttgtgcattttgcaataaaaaaatatgt
tttgttataaagaagcaattattgttatttggttcaattggttcagtgta
tcaaatctctcagtttagttgacactttggtatcttcgttgcgtcacagc
gaaaggtttgtttttattttagtttgtatctttgaaagaccccatcggat
ttaggcagtggtgtcagatttaggacctctcacggtagttagaaaataaa
aaacaaagtctcagacagtcagaaaagagaaaaataggataagagatagg
aaataaaaaaaggtGACGATTGGCCATCCAATATAACATCTACCGTAGCA
CCTCCGTAAAGCTGAAAAATCTGTTTACTTATCTGCCGAATTCAATAGAA
GCCGTTACTCTAGCGGCTCCGTAACGGACTGGCTATAGTCCTGGCAATTC
AGCTACAAAAAACAATCTGCCGGAACTTTAAATACATATGGAGCCGCTAG
AGTAACAGCAAACTAAAAATATGGATTTGATTCCCGGTTTCAGGGAGATT
TGTCTGATTGaagaaatttgattggctaaaaaaTACATCCGCCTGAGAAC
CACTTACCTACGATTAAAACAATTaaatacaattaaaaagaaacactaat
tactccaaatttgagtctaaggctGAACCTGTGTCGTGGGAGAagccttt
cttcttttttagagAAAACACAACAAGAAGGAGAATACAAAATAgaatac
aaaatttcaaaaagtatggTTCATGGGTTAATGCTGTAAAACCCATCAAT
AAGTCAGCATCACCAGGGTTGCGATCAACCTGCGCTTTCCTGAAGCGAAA
AGTTCATGGGTAAATGCTGTGTTACACCCATCAATAAGCCAGCATCACCA
GGGTTGCGATCAACCTGCGCTTTCCTGAAGCGAAAAAGTCCTTGTTCTGA
TCTTAACAATGTATTTACACAAGCTCTTGACGATTGTGTTGTATTCAACA
ATCTGGCTGAAACCTAACAACATCAAAGTCAGATATGTATTCAACACTGA
CATTACATTCATTCCTGATGGGGATATATTCACCAAAGAAGTGTTCTTCA
CTATTTCGTACAACATGATCCATACAAAAATTCAGCCCAGAAAACAATCT
ACATATCTGATCAACTTGTTACTGATCCTTAGTGCTCAAATTGAAACCAA
CCCAGGACCAGCTCGTCCAATTAAATTTCCATGTGGCGAGTGTTATAAAG
CTGTGAAATGGGGTCAAAGAGCAATAGCATGTGACTCGTGTGACCAATGG
TTCCACAAAGATTGTATTGAAATAAACAGTCTTATCTACCAAGCTTATGA
ATCAACTCCTGATCTCACCTGGGAATGTTGCAACTGTGGTATCAAAAATA
TCAGCCCATCATTATTCGACAATACTCTCAACTCCTCAACTGATTCAAAC
ATCTCTAATGCCAGCGATGACACACCAGAGCTATTAGCCAAACAACTTCG
CATCTTATGCATAAACTTTTGTAGTATCTGGGACAAGAAAGAACTCCTTG
AAGATGCGCTATTCGATGATAACATTGATGTTATCATTGGATCTGAAACC
CACTTAGATCCCTGTATCAAGGATAATGAATTTTTACCTGAAAAATACAA
GTGCTTTCGCCATGACAGAATAAAAGATAACTCCAAAGGTGGTGCGATCA
TATTTGTTAAAAGAGAACTCATTGCAGAACAGGTCAAAAAATCAGAGACA
TGCGAACTTGTCTCCATCAAAATCCAGACACATAAACACCCAGTAATCAT
CACTTCGTGCTACAGACCTACTGATTCCAATCTTCTTGTAGCTACCAACA
TATGTAATGAAATCAA Coding sequence (CDS) from alignment at sc0002964:3864..5979 >TCONS_00041668 ID=TCONS_00041668|Name=TCONS_00041668|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at sc0002964:3864..5979 (Clytia hemisphaerica)
ATGTATTTACACAAGCTCTTGACGATTGTGTTGTATTCAACAATCTGGCT
GAAACCTAACAACATCAAAGTCAGATATGTATTCAACACTGACATTACAT
TCATTCCTGATGGGGATATATTCACCAAAGAAGTGTTCTTCACTATTTCG
TACAACATGATCCATACAAAAATTCAGCCCAGAAAACAATCTACATATCT
GATCAACTTGTTACTGATCCTTAGTGCTCAAATTGAAACCAACCCAGGAC
CAGCTCGTCCAATTAAATTTCCATGTGGCGAGTGTTATAAAGCTGTGAAA
TGGGGTCAAAGAGCAATAGCATGTGACTCGTGTGACCAATGGTTCCACAA
AGATTGTATTGAAATAAACAGTCTTATCTACCAAGCTTATGAATCAACTC
CTGATCTCACCTGGGAATGTTGCAACTGTGGTATCAAAAATATCAGCCCA
TCATTATTCGACAATACTCTCAACTCCTCAACTGATTCAAACATCTCTAA
TGCCAGCGATGACACACCAGAGCTATTAGCCAAACAACTTCGCATCTTAT
GCATAAACTTTTGTAGTATCTGGGACAAGAAAGAACTCCTTGAAGATGCG
CTATTCGATGATAACATTGATGTTATCATTGGATCTGAAACCCACTTAGA
TCCCTGTATCAAGGATAATGAATTTTTACCTGAAAAATACAAGTGCTTTC
GCCATGACAGAATAAAAGATAACTCCAAAGGTGGTGCGATCATATTTGTT
AAAAGAGAACTCATTGCAGAACAGGTCAAAAAATCAGAGACATGCGAACT
TGTCTCCATCAAAATCCAGACACATAAACACCCAGTAATCATCACTTCGT
GCTACAGACCTACTGATTCCAATCTTCTTGTAGCTACCAACATATGTAAT
GAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041668-exon-sc0002964-1491911889:3864..5979 | TCONS_00041668-exon-sc0002964-1491911889:3864..5979 | Clytia hemisphaerica | exon |
| TCONS_00041668-exon-sc0002964-1510915933:3864..5979 | TCONS_00041668-exon-sc0002964-1510915933:3864..5979 | Clytia hemisphaerica | exon |
| TCONS_00041668-exon-sc0002964-1575043694:3864..5979 | TCONS_00041668-exon-sc0002964-1575043694:3864..5979 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002964 | supercontig | sc0002964:3864..5979 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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