TCONS_00041667 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041667
Unique NameTCONS_00041667
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length794

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041667 ID=TCONS_00041667|Name=TCONS_00041667|organism=Clytia hemisphaerica|type=transcript|length=794bp
CTCTCTTGCTTAAAGAATCAGCTCTCCTGAGTGTTCGTATTAAACATGGT
AGCACACCGAACACGCAATGCAACATCAAGAACAGCCCCATCGCGGTGGT
TCACCCTATGCCTCGCCAGCAACCTCTTAAAGATGCCAGCATCGCCAATA
AAGAGAACATTCCAACTGAACGTCTGAACGCCAATAATCAACAATCGAAA
TTGACTCAACCTATGAAGTCAAAAGCAAATTCGAAACTTTTGCAACCCAA
GTTTGGTTCGAAAGCAAGACCTTCGTCACAACCCGAATCAAGTTCGGGAC
TCACGAAACTTCCTGTCTCCAAAGTTCGTAGAGGAACAGGCCCGTCATCG
TCCACAGATTCCTCTGAGATTGTGGACAAGGTTAGTTTGTACGGTCTGGA
TAAAAGCTCGTCATCTTCCACTTCATCAAAACCACGACGAAGATCAGTCA
ATCAGGCTAAGGCAAATCCAACAGCTGCTCCTCCATCATCGACCAGCCAA
CAAAATAAATCGCAAGTTCCCAACCTCCGACCTTCAGCGCTGTCTACATC
TCGTCTGAAGGCACCATCATCTAAAAGCACTTCAGACATGAAGCTATCCA
CCTCCGCTAGGGGACCTATGCGTGCAACAGCTTCCCAATCCACTATACCA
AGTACGGTCAATAGCGGTGTTCCAAGGACGAATTTAAAACTTCAAAGTGT
CTCACGAAAGAGCACTGCTTCAACCGGTTTGtagttttaaattatttttt
tagctGCGTCCTGCGGACCGTGGTGCAGttgtagagcatccggc
Run BLAST on NCBI

protein sequence of TCONS_00041667-protein

>TCONS_00041667-protein ID=TCONS_00041667-protein|Name=TCONS_00041667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
LLLKESALLSVRIKHGSTPNTQCNIKNSPIAVVHPMPRQQPLKDASIANK
ENIPTERLNANNQQSKLTQPMKSKANSKLLQPKFGSKARPSSQPESSSGL
TKLPVSKVRRGTGPSSSTDSSEIVDKVSLYGLDKSSSSSTSSKPRRRSVN
QAKANPTAAPPSSTSQQNKSQVPNLRPSALSTSRLKAPSSKSTSDMKLST
SARGPMRATASQSTIPSTVNSGVPRTNLKLQSVSRKSTASTGL
Run BLAST on NCBI

transcript from alignment at sc0002964:9..2485-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041667 ID=TCONS_00041667|Name=TCONS_00041667|organism=Clytia hemisphaerica|type=transcript|length=2477bp|location=Sequence derived from alignment at sc0002964:9..2485- (Clytia hemisphaerica)
CTCTCTTGCTTAAAGAATCAGCTCTCCTGAGTGTTCGTATTAAACATGGT
AGCACACCGAACACGCAATGCAACATCAAGAACAGCCCCATCGCGGTGGT
TCACCCTATGCCTCGCCAGCAACCTCTTAAAGATGCCAGCATCGCCAATA
AAGAGAACATTCCAACTGAACGTCTGAACGCCAATAATCAACAATCGAAA
TTGACTCAACCTATGAAGTCAAAAGCAAATTCGAAACTTTTGCAACCCAA
GTTTGGTTCGAAAGCAAGACCTTCGTCACAACCCGAATCAAGTTCGGGAC
TCACGAAACTTCCTGTCTCCAAAGTTCGTAGAGGAACAGGCCCGTCATCG
TCCACAGATTCCTCTGAGGTAAGATCACTGTCCTTTATGCCCTGGACAAA
GTTTCTCAACACCGGCTAAGCAAAGTCTTTGATCGGAGCTTTTTTGAAAA
TTGGTACCCTAATAGCACTACTCAATAGCTGTGTAAATGCATCGAAAGTG
CTAACTACTTTTCCTCCAATGCTTTTGCAAGATTCTTTTTTCGCCCCAAA
TTCTATAGCGAGCACCTACTAAGACCACGTTTGCACGCTATGAAGCCATT
CTATTGGTTATTTTCGAATTCCACGTCACTTCTAACCAATAGAATGGCTT
CATTTCGTTTTGGAGCGATACAGAACCGTTAAGTGCGAACACAGTCAAAG
AACCAGTATTTTTTATTCCGTTTCTTGGTGAGTTCCACTTTAAATAGAAG
CCTTTTCAAGTTTTTTGACGCAAATTTGATTTTTCGCTACTGCATGAGCT
TCGAAAGTTGAAAGTGGCGTAAAAAAATCGTTGAGTTTTAGGAGCCCGAA
AACCTGGGCTGTGAACATTCGAAAAATTAGCAAAGTGTCTTCTAGTATAC
GCTAAATATCCTAGCATTATTGACGTTTTCTATATCTTTTATTTGAAACA
ATCGTCATGTGAAAAAAATGTCGTCTTTCCCAAGCTCATTTTGAAGCATT
ATTTGAACTAGCGTTCATTTGAGAAACAGGGTTGGACTTCACATTATATT
AAACGGTAGTGCAGTGGAAAAGCATCTGGCTACGATGCGCAAGGTCATAC
CAAAGACTTTGTACTTAGTGCCCTTAGGTAATTAACAGAAGGATCGAGGG
TAAGTGGAGCAATCCAGAGAGTGTCGCCCTCCTTTACCTTCTTGTAGATA
GCTATCTAAAGAGGAGCCTTTGGGCCGCCTCCGACTGCAGTCGCAGACTT
ACTTACTACTTACTTACTTACTACTTTATTTTTATAAAGCCACTCGCACT
TTTTATTCCATAGATTGTGGACAAGGTTAGTTTGTACGGTCTGGATAAAA
GCTCGTCATCTTCCACTTCATCAAAACCACGACGAAGATCAGTCAATCAG
GCTAAGGTACATATTATAATCAATTCTTTATATCATGGCCGTATGGCGAA
GTGGTACGGTGGTAATCGCTCTCGTCTCTCGCACAGGAGACCTAAGTTCG
ATCCCCACCGTGGTAGCTCGACTCACTTGGCAGTGACCCTACCATGTGAG
GAGAATAGGATACCACAATATTCTGATAGATTGCGGGTAGATATGCCAGA
CATTGTGTTTTGATTGCATTCTTTTTCAAGCTTGCGAGTGCTTAGTTGCT
CTGTTCGAGTGTAATCATGATTCGTCATAATACCTGCGTGTCGCGTACAC
ATAACCCCCGGGGGGGGCACTCAAGGTAAGCGACCGACCGACCGTACGTG
CGGCCCTTAAGGGTCTTTTTTCCAATCTTCACAAAGTGAACTGTAAGGGT
CGAGATGAATAAAAATGAGAAAAAGTGATTTTCTCTGCACTGTAAGGGTC
CGATTTCAAAGGCCTAATTTTGGGCCGCACGTACGGTCGTTTTTGAATCG
AGTGCCCCCCGGACACATCACGGTTTCATCACGGTCTGGAGTAGCGCTAT
AAGTTTCTACTCAAAATAGATCTCAATGATTGTTGATTCTCATTGATACG
GTGGGGGTACTTGCAATTTTTAAGGAATAGTCTCCCAGTTGTGCAGCAGC
CACAATTTCTTTGCCTCAGTTCTTTCAAACCACTCGATTTAATTGATTTG
AAATAAATATAAAATTACAATTTTCATTTGTTCTCTTCCTGAAGGCAAAT
CCAACAGCTGCTCCTCCATCATCGACCAGCCAACAAAATAAATCGCAAGT
TCCCAACCTCCGACCTTCAGCGCTGTCTACATCTCGTCTGAAGGCACCAT
CATCTAAAAGCACTTCAGACATGAAGCTATCCACCTCCGCTAGGGGACCT
ATGCGTGCAACAGCTTCCCAATCCACTATACCAAGTACGGTCAATAGCGG
TGTTCCAAGGACGAATTTAAAACTTCAAAGTGTCTCACGAAAGAGCACTG
CTTCAACCGGTTTGTAGTTTTAAATTATTTTTTTAGCTGCGTCCTGCGGA
CCGTGGTGCAGTTGTAGAGCATCCGGC

Coding sequence (CDS) from alignment at sc0002964:9..2485-

>TCONS_00041667 ID=TCONS_00041667|Name=TCONS_00041667|organism=Clytia hemisphaerica|type=CDS|length=2196bp|location=Sequence derived from alignment at sc0002964:9..2485- (Clytia hemisphaerica)
GCAAATCCAACAGCTGCTCCTCCATCATCGACCAGCCAACAAAATAAATC
GCAAGTTCCCAACCTCCGACCTTCAGCGCTGTCTACATCTCGTCTGAAGG
CACCATCATCTAAAAGCACTTCAGACATGAAGCTATCCACCTCCGCTAGG
GGACCTATGCGTGCAACAGCTTCCCAATCCACTATACCAAGTACGGTCAA
TAGCGGTGTTCCAAGGACGAATTTAAAACTTCAAAGTGTCTCACGAAAGA
GCACTGCTTCAACCGGTTTGTAGATTGTGGACAAGGTTAGTTTGTACGGT
CTGGATAAAAGCTCGTCATCTTCCACTTCATCAAAACCACGACGAAGATC
AGTCAATCAGGCTAAGCTCTTGCTTAAAGAATCAGCTCTCCTGAGTGTTC
GTATTAAACATGGTAGCACACCGAACACGCAATGCAACATCAAGAACAGC
CCCATCGCGGTGGTTCACCCTATGCCTCGCCAGCAACCTCTTAAAGATGC
CAGCATCGCCAATAAAGAGAACATTCCAACTGAACGTCTGAACGCCAATA
ATCAACAATCGAAATTGACTCAACCTATGAAGTCAAAAGCAAATTCGAAA
CTTTTGCAACCCAAGTTTGGTTCGAAAGCAAGACCTTCGTCACAACCCGA
ATCAAGTTCGGGACTCACGAAACTTCCTGTCTCCAAAGTTCGTAGAGGAA
CAGGCCCGTCATCGTCCACAGATTCCTCTGAGGCAAATCCAACAGCTGCT
CCTCCATCATCGACCAGCCAACAAAATAAATCGCAAGTTCCCAACCTCCG
ACCTTCAGCGCTGTCTACATCTCGTCTGAAGGCACCATCATCTAAAAGCA
CTTCAGACATGAAGCTATCCACCTCCGCTAGGGGACCTATGCGTGCAACA
GCTTCCCAATCCACTATACCAAGTACGGTCAATAGCGGTGTTCCAAGGAC
GAATTTAAAACTTCAAAGTGTCTCACGAAAGAGCACTGCTTCAACCGGTT
TGTAGATTGTGGACAAGGTTAGTTTGTACGGTCTGGATAAAAGCTCGTCA
TCTTCCACTTCATCAAAACCACGACGAAGATCAGTCAATCAGGCTAAGCT
CTTGCTTAAAGAATCAGCTCTCCTGAGTGTTCGTATTAAACATGGTAGCA
CACCGAACACGCAATGCAACATCAAGAACAGCCCCATCGCGGTGGTTCAC
CCTATGCCTCGCCAGCAACCTCTTAAAGATGCCAGCATCGCCAATAAAGA
GAACATTCCAACTGAACGTCTGAACGCCAATAATCAACAATCGAAATTGA
CTCAACCTATGAAGTCAAAAGCAAATTCGAAACTTTTGCAACCCAAGTTT
GGTTCGAAAGCAAGACCTTCGTCACAACCCGAATCAAGTTCGGGACTCAC
GAAACTTCCTGTCTCCAAAGTTCGTAGAGGAACAGGCCCGTCATCGTCCA
CAGATTCCTCTGAGGCAAATCCAACAGCTGCTCCTCCATCATCGACCAGC
CAACAAAATAAATCGCAAGTTCCCAACCTCCGACCTTCAGCGCTGTCTAC
ATCTCGTCTGAAGGCACCATCATCTAAAAGCACTTCAGACATGAAGCTAT
CCACCTCCGCTAGGGGACCTATGCGTGCAACAGCTTCCCAATCCACTATA
CCAAGTACGGTCAATAGCGGTGTTCCAAGGACGAATTTAAAACTTCAAAG
TGTCTCACGAAAGAGCACTGCTTCAACCGGTTTGTAGATTGTGGACAAGG
TTAGTTTGTACGGTCTGGATAAAAGCTCGTCATCTTCCACTTCATCAAAA
CCACGACGAAGATCAGTCAATCAGGCTAAGCTCTTGCTTAAAGAATCAGC
TCTCCTGAGTGTTCGTATTAAACATGGTAGCACACCGAACACGCAATGCA
ACATCAAGAACAGCCCCATCGCGGTGGTTCACCCTATGCCTCGCCAGCAA
CCTCTTAAAGATGCCAGCATCGCCAATAAAGAGAACATTCCAACTGAACG
TCTGAACGCCAATAATCAACAATCGAAATTGACTCAACCTATGAAGTCAA
AAGCAAATTCGAAACTTTTGCAACCCAAGTTTGGTTCGAAAGCAAGACCT
TCGTCACAACCCGAATCAAGTTCGGGACTCACGAAACTTCCTGTCTCCAA
AGTTCGTAGAGGAACAGGCCCGTCATCGTCCACAGATTCCTCTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025600XLOC_025600Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041667-proteinTCONS_00041667-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041667-exon-sc0002964-1575043694:2118..2485TCONS_00041667-exon-sc0002964-1575043694:2118..2485Clytia hemisphaericaexon
TCONS_00041667-exon-sc0002964-1575043694:1080..1172TCONS_00041667-exon-sc0002964-1575043694:1080..1172Clytia hemisphaericaexon
TCONS_00041667-exon-sc0002964-1575043694:9..341TCONS_00041667-exon-sc0002964-1575043694:9..341Clytia hemisphaericaexon
TCONS_00041667-exon-sc0002964-1510915933:2118..2485TCONS_00041667-exon-sc0002964-1510915933:2118..2485Clytia hemisphaericaexon
TCONS_00041667-exon-sc0002964-1510915933:1080..1172TCONS_00041667-exon-sc0002964-1510915933:1080..1172Clytia hemisphaericaexon
TCONS_00041667-exon-sc0002964-1510915933:9..341TCONS_00041667-exon-sc0002964-1510915933:9..341Clytia hemisphaericaexon
TCONS_00041667-exon-sc0002964-1491911889:2118..2485TCONS_00041667-exon-sc0002964-1491911889:2118..2485Clytia hemisphaericaexon
TCONS_00041667-exon-sc0002964-1491911889:1080..1172TCONS_00041667-exon-sc0002964-1491911889:1080..1172Clytia hemisphaericaexon
TCONS_00041667-exon-sc0002964-1491911889:9..341TCONS_00041667-exon-sc0002964-1491911889:9..341Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002964supercontigsc0002964:9..2485 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.5719	25.5043	19.3135	17.464	17.7978	15.4681	10.4065	11.1014	5.12216	9.64635	6.64793	3.52789	2.29915	3.29958	6.44552	8.25367	13.6955	8.76292	0.573842	1.37502	3.78433	3.32693	18.5324	15.6305	11.3719	12.3397	2.53146	1.78799	11.395	12.6433
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041667 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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