TCONS_00041666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041666
Unique NameTCONS_00041666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length813

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041666 ID=TCONS_00041666|Name=TCONS_00041666|organism=Clytia hemisphaerica|type=transcript|length=813bp
CTTTGCAGGTATGATGCTTTACCTAACCTTGATTCTGATGAAAATTTACC
CATTGGTAAAGACATAAGTCACTTGAAAACCTATTTTAAACACTTAAATT
CTATTTCAGATACTTTTTCTAATGTTGATTCTCAAATCGATGAACAACGA
GATGATATTACATATGATGACCATGTTAATCATTTTGATTGCAAATATTT
TAGTACTCCagaattttcttctctttctctcaaaaaacaaaatttttctt
gcttCCATCTGAACATTTGCTCTTTGGAAAAACACCACGATAATCTTACT
ACGTTACTTTCTCGTCTTAACCATCATTTTAGCATTCTTGGTATCACTGA
GACAAGGCTTCATTCTTCGATCGAAAATACTGAGCTCTCCATCCCTGGTT
TTAAGTCATTCGATACCCCGGCAGTCACAACAGTTGGGGGAACTGCCCTT
TTTATTTCTAAATCTTTCAATAGCAAGCCTCGTAAAGATCTTTCAAAGCT
TGTATATTCTAATTCTTGCAACCTTGAATCCACCTTTGCTGAAATTGTCC
TGAAAAACCGTAAAAATTTCATTGTTGGATGTATTTATAAACACCCTCTT
TTCGACATTGATCTTTTTaacgaaaaatctttaactCCTTTGTTGCGAAA
GTcttgtcaagaaaacaaaaatctcGTCCTGTTTGGTGACTTCAACATTG
ATCTTTTGACTTGTGATTCTGAAATCTCTCACTCCAAATTTCTTGACGTC
CTTGGTGCCTATCAAATTCTTCCATCTATTACTCTTCCAACGCGGATCAC
TGATACTTCAAGT
Run BLAST on NCBI

protein sequence of TCONS_00041666-protein

>TCONS_00041666-protein ID=TCONS_00041666-protein|Name=TCONS_00041666-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
LCRYDALPNLDSDENLPIGKDISHLKTYFKHLNSISDTFSNVDSQIDEQR
DDITYDDHVNHFDCKYFSTPEFSSLSLKKQNFSCFHLNICSLEKHHDNLT
TLLSRLNHHFSILGITETRLHSSIENTELSIPGFKSFDTPAVTTVGGTAL
FISKSFNSKPRKDLSKLVYSNSCNLESTFAEIVLKNRKNFIVGCIYKHPL
FDIDLFNEKSLTPLLRKSCQENKNLVLFGDFNIDLLTCDSEISHSKFLDV
LGAYQILPSITLPTRITDTSS
Run BLAST on NCBI

transcript from alignment at sc0002962:6329..7141

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041666 ID=TCONS_00041666|Name=TCONS_00041666|organism=Clytia hemisphaerica|type=transcript|length=813bp|location=Sequence derived from alignment at sc0002962:6329..7141 (Clytia hemisphaerica)
ACTTGAAGTATCAGTGATCCGCGTTGGAAGAGTAATAGATGGAAGAATTT
GATAGGCACCAAGGACGTCAAGAAATTTGGAGTGAGAGATTTCAGAATCA
CAAGTCAAAAGATCAATGTTGAAGTCACCAAACAGGACgagatttttgtt
ttcttgacaagACTTTCGCAACAAAGGagttaaagatttttcgttAAAAA
GATCAATGTCGAAAAGAGGGTGTTTATAAATACATCCAACAATGAAATTT
TTACGGTTTTTCAGGACAATTTCAGCAAAGGTGGATTCAAGGTTGCAAGA
ATTAGAATATACAAGCTTTGAAAGATCTTTACGAGGCTTGCTATTGAAAG
ATTTAGAAATAAAAAGGGCAGTTCCCCCAACTGTTGTGACTGCCGGGGTA
TCGAATGACTTAAAACCAGGGATGGAGAGCTCAGTATTTTCGATCGAAGA
ATGAAGCCTTGTCTCAGTGATACCAAGAATGCTAAAATGATGGTTAAGAC
GAGAAAGTAACGTAGTAAGATTATCGTGGTGTTTTTCCAAAGAGCAAATG
TTCAGATGGaagcaagaaaaattttgttttttgagagaaagagaagaaaa
ttctGGAGTACTAAAATATTTGCAATCAAAATGATTAACATGGTCATCAT
ATGTAATATCATCTCGTTGTTCATCGATTTGAGAATCAACATTAGAAAAA
GTATCTGAAATAGAATTTAAGTGTTTAAAATAGGTTTTCAAGTGACTTAT
GTCTTTACCAATGGGTAAATTTTCATCAGAATCAAGGTTAGGTAAAGCAT
CATACCTGCAAAG

Coding sequence (CDS) from alignment at sc0002962:6329..7141

>TCONS_00041666 ID=TCONS_00041666|Name=TCONS_00041666|organism=Clytia hemisphaerica|type=CDS|length=813bp|location=Sequence derived from alignment at sc0002962:6329..7141 (Clytia hemisphaerica)
ACTTGAAGTATCAGTGATCCGCGTTGGAAGAGTAATAGATGGAAGAATTT
GATAGGCACCAAGGACGTCAAGAAATTTGGAGTGAGAGATTTCAGAATCA
CAAGTCAAAAGATCAATGTTGAAGTCACCAAACAGGACgagatttttgtt
ttcttgacaagACTTTCGCAACAAAGGagttaaagatttttcgttAAAAA
GATCAATGTCGAAAAGAGGGTGTTTATAAATACATCCAACAATGAAATTT
TTACGGTTTTTCAGGACAATTTCAGCAAAGGTGGATTCAAGGTTGCAAGA
ATTAGAATATACAAGCTTTGAAAGATCTTTACGAGGCTTGCTATTGAAAG
ATTTAGAAATAAAAAGGGCAGTTCCCCCAACTGTTGTGACTGCCGGGGTA
TCGAATGACTTAAAACCAGGGATGGAGAGCTCAGTATTTTCGATCGAAGA
ATGAAGCCTTGTCTCAGTGATACCAAGAATGCTAAAATGATGGTTAAGAC
GAGAAAGTAACGTAGTAAGATTATCGTGGTGTTTTTCCAAAGAGCAAATG
TTCAGATGGaagcaagaaaaattttgttttttgagagaaagagaagaaaa
ttctGGAGTACTAAAATATTTGCAATCAAAATGATTAACATGGTCATCAT
ATGTAATATCATCTCGTTGTTCATCGATTTGAGAATCAACATTAGAAAAA
GTATCTGAAATAGAATTTAAGTGTTTAAAATAGGTTTTCAAGTGACTTAT
GTCTTTACCAATGGGTAAATTTTCATCAGAATCAAGGTTAGGTAAAGCAT
CATACCTGCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025599XLOC_025599Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041666-exon-sc0002962-1491911889:6329..7141TCONS_00041666-exon-sc0002962-1491911889:6329..7141Clytia hemisphaericaexon
TCONS_00041666-exon-sc0002962-1510915933:6329..7141TCONS_00041666-exon-sc0002962-1510915933:6329..7141Clytia hemisphaericaexon
TCONS_00041666-exon-sc0002962-1575043694:6329..7141TCONS_00041666-exon-sc0002962-1575043694:6329..7141Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041666-proteinTCONS_00041666-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002962supercontigsc0002962:6329..7141 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.0169	0.769246	1.54818	1.36694	0.81335	0.519197	0.481316	1.16825	0.296984	0.38388	0.654604	0.887901	0.566156	0.391967	0.236215	0.502043	0.617321	0.858196	0.624398	0.590329	0.416465	0.581716	0.270177	0.272799	0.429103	0.537827	0.915839	0.742064	0.800386	0.186322
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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