TCONS_00041662 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00041662
Unique Name	TCONS_00041662
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	984

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0002959:8191..11850-
coding sequence from alignment at sc0002959:8191..11850-

transcript sequence

>TCONS_00041662 ID=TCONS_00041662|Name=TCONS_00041662|organism=Clytia hemisphaerica|type=transcript|length=984bp
tcctgactgactgaggacgaagGTAAGTAAGAGGacttaccgtcctcgat
ttggTGGGTCAACTTCAGTCTCTCTGCCGTCCTCAAAAGGGTAGATAGAT
AAACTCACTAACCACGAAGACGAACGGAAAAAGTAATATGCGAGTTTCAC
ATCACATTTCTCATTTTGGTTAGCCTAACCTCCAGTGCGTTTAACAATGT
ATTTAACcaatgacattttgaaaataacaatGCCAATAACAATGTATGTA
TTTAACCTCACGAATACAAGAAATTTTGTCATACCAAACAATAAAGCACT
ACTGTCGACTACtatcttatttcttttttagtgGTATCAGAAGCCATGGA
GAGCTTTGACACTGGAGGTTGTGGTGGTATGGACGACTTCAGTGATAATG
ATGAAAGGAACGATGCATTAGATGATTTACAATTTGGTCACCAAGGTGCC
GCTATCCCTGATAATGGAATGTCATCAAAaGACCAAATGTTTGGTACTAC
GGGAACTTCACACATCGCTCTTTCGTTGAACCCAAGCGAATACTCTTACT
TCAGTCAAGATCACATGAAAATGTGGGCTGGTCCTCTGCATTGGAAAGTC
AAGGCGAAATCAAAAGACAAAACGATTTCCACGACAAACGCCTCAAAAAT
GTCGACAAAGAAAACACAGATTCGTATTGATTTTGACGAAGAAATCGACC
TGAAGAAACACTTTACCACTGGAAGGggAGCAACGCATATGAAGGCCGTT
GCCATGGACAACAAACAAGCGGCACAGATGAGCGTGCTTCCAGCAGACTT
GCATTACGAAACTGAAAGCCTCTTCAAATTATCAACAAGAACATTTGTAT
CGaTTAAACGACAATCAGACGCAGTTGATCTGAAAAACGAAGGTACGTac
actcttaggttccaaataaacgcccccccgcttgttaatttttcgaaaat
tttccaacccccctggaccttattaggacccccc

Run BLAST on NCBI

protein sequence of TCONS_00041662-protein

>TCONS_00041662-protein ID=TCONS_00041662-protein|Name=TCONS_00041662-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MESFDTGGCGGMDDFSDNDERNDALDDLQFGHQGAAIPDNGMSSKDQMFG
TTGTSHIALSLNPSEYSYFSQDHMKMWAGPLHWKVKAKSKDKTISTTNAS
KMSTKKTQIRIDFDEEIDLKKHFTTGRGATHMKAVAMDNKQAAQMSVLPA
DLHYETESLFKLSTRTFVSIKRQSDAVDLKNEGTYTLRFQINAPPLVNFS
KIFQPPWTLLGPP

Run BLAST on NCBI

transcript from alignment at sc0002959:8191..11850-

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00041662 ID=TCONS_00041662|Name=TCONS_00041662|organism=Clytia hemisphaerica|type=transcript|length=3660bp|location=Sequence derived from alignment at sc0002959:8191..11850- (Clytia hemisphaerica)
TCCTGACTGACTGAGGACGAAGGTAAGTAAGAGGACTTACCGTCCTCGAT
TTGGTGGGTCAACTTCAGTCTCTCTGCCGTCCTCAAAAGGGTAGATAGAT
AAACTCACTAACCACGAAGACGAACGGAAAAAGTAATATGCGAGTTTCAC
ATCACATTTCTCATTTTGGTTAGCCTAACCTCCAGTGCGTTTAACAATGT
ATTTAACCAATGACATTTTGAAAATAACAATGCCAATAACAATGTATGTA
TTTAACCTCACGAATACAAGAAATTTTGTCATACCAAACAATAAAGCACT
ACTGTCGACTACTATCTTATTTCTTTTTTAGTGGTATCAGAAGCCATGGA
GAGCTTTGACACTGGAGGTTGTGGTGGTATGGACGACTTCAGTGATAATG
ATGAAAGGGTATTAAACGTTATTTTTTGATAGGGTCCAAAAGAGGGCCAT
TTTCTCATTTTCCAACTTTTCCTATAGGCCTTAGCAAAAAAAATACTCCT
CGCAAAAAAATCTTGAAAGAAAAATTTCATTCTTCAAAATGAACCAGGTT
TGGTAGCGTCGAATAAAAGATGTCACGAGTCTTAAGGCTAGGCCCAACTT
ACTAAATGAATAGATTAAACTCAACGTTTCTTTTCTTCCTAGCCTTGACA
AAATTTGACAAATGTAGACTGACAAGAGCAGCCGCCGGCAGATTTTTTTG
AAATATCTGTTCTTTTTTTCCAGGAGAGTAAATTTTATGGATAAATCTAG
TAGAGACTTTCCTCAAAACACCCAGGTAAAATCCAGGGGTCGCCTTAAAG
ACATCTGTTCTTAAAATCCAGGAGCACATTTTAAGAAAAAACAGATACAA
TTTTCCAGCGGATAATCTGTTTAAAAAATCCAGGAGCTAAATTGTGAAAA
ACACAACCATATGCCAGATTTTTTTTCCAGGGACCTACATAATTTTCTTA
AAAAGTCTCATTTTCTAGGAGCATTTTAACTTTCTTAGAGAATAGCTGTT
ATAATTTTCCAGGAGCATAGAACAGATATACATTTTCCAGGAGTCCCATT
TTTTTCCCAGAACAGATGATATAATCCAGGAGAGCCCAGGATACAGAACA
GATAGTTTTTTTCCAGGAGAAAGGGGCCTCAAGAAGATAGATTCAGATAT
TATCCACCTAGCCGGTGGCTGCTCTTGGACTGATATAGGTGGTTAACCTA
ATAATATTTTCATCAAAAGAAAATCATTTATATTTTTATTTTCAAGAATG
CCGTCTATGACCCACTGGGTGATAAAGTAAAAGGGTTTGACGGTTAATTA
TGTAGTGGTGTTTCAAAAGTTATAAGCTGGTATATAACTGGTATTTATTG
GTACAATAAAAAATCTTTTGCTCTAAAAACAGCTAAAAACAACTCATAAT
CAAATTTCACGAAATTTACTATATAATCTGCTGAACCTTAAAGAGCATAA
TTTAACGTACGCCATAACATCTGCTTGCATAGCATTTTTAAACTAAAGAA
CAAACGATTCCTCCCTTCCCCGCGCAGATGAAATGGAGTTTTTACTTTAA
TAATTGGTCATTTGAAGTAATAAAAATGACGCGTTCTTTAGAAAAAGTAA
CAAAATTGTTAAACGACCAACCAAATCAAATAAGGGATTGTAATAACTCC
ATCTCGTCCCTCCCCGCGCCGCGCGAATACAAATTTGTTTATTATGCTTT
GTCAGCATCAGAGGCGCGCTTGCTTTCTATATCATAAAAAATTATCTTAA
AATTTTGACAATTTGCAGAACGATGCATTAGATGATTTACAATTTGGTCA
CCAAGGTGCCGCTATCCCTGATAATGGAATGTCATCAAAGTATGTTACTT
TTATTAAGCATTTTAGTTCTTTTAAAGCATAATTCTTGTTAATTCAGGGA
AGCTTATTTAAAGGAATTCAATATATTGTACGAAAGGAATATTCACAATA
CCCTACCACGGAACTTATAATGTAAATTTTTGCGAGTATTAAATTTTGTA
AAAAAGGCCAAAATATATGTGAAGTAAATAAAAAGCTTACACTGCGAACT
TCACTCATCACCAGCAGCTATGTTTCGATTGTGCAGGTCTTTTACTCTCC
ATCAACGTCGTTCCCGATGTAAAATCACCTTTTTTATGCTTACTAATACA
TGGGGACGATTTTTAACTCTCAATATTTATTTTCAGAGACCAAATGTTTG
GTACTACGGGAACTTCACACATCGCTCTTTCGTTGAACCCAAGCGAATAC
TCTTACTTCAGTCAAGATCACATGAAAATGTGGGCTGGTCCTCTGCATTG
GAAAGTCAAGGCGAAATCAAAAGGTGAAAATCGTTGAAGCTTTAATAATG
ATATTAGTTCATGCGAATTATGTAGATGGAATGGTTTAAAGTTGGAAAGA
AATACAGGAAAAATCTTAGTCAATGGGTTGGGTCATTTATTTATAGCAAT
GCACCACATTAACTTTTTCACATGTGAAGCCTTTAATTTTTTCGCACATA
ATGATCTTTTCCTTGATACTATAAACATTAAGCTCAAATCAGATTCCTCG
TTCTTTAGACAAAACGATTTCCACGACAAACGCCTCAAAAATGTCGACAA
AGAAAACACAGATTCGTATTGATTTTGACGAAGAAATCGACCTGAAGAAA
CACTTTACCACTGGAAGGGTAGGTGGTCAAAGCGCAACATGAAAAACCAA
AACAGATCGAAAGTTTAAGGCTCCGTATAGTTCTGAAAGAAATGAAACTT
TTTCAGTTACATATAACAATAGACAAGGATACCTTTTAAATCATGCAAAA
CTGTTGATTTTTTTCTTGGTCTCAATTTCGATTAATTTATTTTCCATTTA
CAGAGCACATTTTCTGATGGTTTCGATTTCAAGGTTTTCTTTTTCTTAGG
GAGCAACGCATATGAAGGCCGTTGCCATGGACAACAAACAAGCGGCACAG
ATGAGCGTGCTTCCAGCAGACTTGCATTACGAAACTGAAAGCCTCTTCAA
ATTATCAACAAGAACATTTGTATCGGTACGTTTAACTTTTTTCTACAAGG
GACAAAGATGAAAGATATAAGATTCATGACTTTTCTTTCTCTATTGCTAA
TTTCCATTGCTGTTGCCAACCAATGAGAATTGAAATATTATATAATCCTC
CATAACTCGAGCCTCTATAACCCTAACTCCAACAAGTTCACTCGTCCCCT
TAAGTTATGCCTTTTAACCTGTCTCCATATCTCGACATTTCCATAACTCG
AACAAATATGCGCTCCCCTTGCGAAGTCAAGTTATTCTTGATATGCGTAA
GTCACTTTTCTTGCGGAAACACCCTAAAAAAGCCGGGATTTGACCTCTCT
CTGGTACTAAAAATAGAAACACAGAGGTCAAAAACCGGCTTTTTTGGGTG
CTTCCGTTAAAAAATATAACGTCATCGTTATTTCGAATTGAAAATCTTTG
CGAAAATACAGATGACATTTTTCGATTAAATGTTGATGGACGGATATCTG
TTCTAATTGGCTTCATTTTTAATTTCAGATTAAACGACAATCAGACGCAG
TTGATCTGAAAAACGAAGGTACGTACACTCTTAGGTTCCAAATAAACGCC
CCCCCGCTTGTTAATTTTTCGAAAATTTTCCAACCCCCCTGGACCTTATT
AGGACCCCCC

Coding sequence (CDS) from alignment at sc0002959:8191..11850-

>TCONS_00041662 ID=TCONS_00041662|Name=TCONS_00041662|organism=Clytia hemisphaerica|type=CDS|length=3834bp|location=Sequence derived from alignment at sc0002959:8191..11850- (Clytia hemisphaerica)
ATTAAACGACAATCAGACGCAGTTGATCTGAAAAACGAAGGTACGTACAC
TCTTAGGTTCCAAATAAACGCCCCCCCGCTTGTTAATTTTTCGAAAATTT
TCCAACCCCCCTGGACCTTATTAGGACCCCCCGGAGCAACGCATATGAAG
GCCGTTGCCATGGACAACAAACAAGCGGCACAGATGAGCGTGCTTCCAGC
AGACTTGCATTACGAAACTGAAAGCCTCTTCAAATTATCAACAAGAACAT
TTGTATCGACAAAACGATTTCCACGACAAACGCCTCAAAAATGTCGACAA
AGAAAACACAGATTCGTATTGATTTTGACGAAGAAATCGACCTGAAGAAA
CACTTTACCACTGGAAGGAGACCAAATGTTTGGTACTACGGGAACTTCAC
ACATCGCTCTTTCGTTGAACCCAAGCGAATACTCTTACTTCAGTCAAGAT
CACATGAAAATGTGGGCTGGTCCTCTGCATTGGAAAGTCAAGGCGAAATC
AAAAGAACGATGCATTAGATGATTTACAATTTGGTCACCAAGGTGCCGCT
ATCCCTGATAATGGAATGTCATCAAAATGGAGAGCTTTGACACTGGAGGT
TGTGGTGGTATGGACGACTTCAGTGATAATGATGAAAGGATTAAACGACA
ATCAGACGCAGTTGATCTGAAAAACGAAGGTACGTACACTCTTAGGTTCC
AAATAAACGCCCCCCCGCTTGTTAATTTTTCGAAAATTTTCCAACCCCCC
TGGACCTTATTAGGACCCCCCGGAGCAACGCATATGAAGGCCGTTGCCAT
GGACAACAAACAAGCGGCACAGATGAGCGTGCTTCCAGCAGACTTGCATT
ACGAAACTGAAAGCCTCTTCAAATTATCAACAAGAACATTTGTATCGACA
AAACGATTTCCACGACAAACGCCTCAAAAATGTCGACAAAGAAAACACAG
ATTCGTATTGATTTTGACGAAGAAATCGACCTGAAGAAACACTTTACCAC
TGGAAGGAGACCAAATGTTTGGTACTACGGGAACTTCACACATCGCTCTT
TCGTTGAACCCAAGCGAATACTCTTACTTCAGTCAAGATCACATGAAAAT
GTGGGCTGGTCCTCTGCATTGGAAAGTCAAGGCGAAATCAAAAGAACGAT
GCATTAGATGATTTACAATTTGGTCACCAAGGTGCCGCTATCCCTGATAA
TGGAATGTCATCAAAATGGAGAGCTTTGACACTGGAGGTTGTGGTGGTAT
GGACGACTTCAGTGATAATGATGAAAGGATTAAACGACAATCAGACGCAG
TTGATCTGAAAAACGAAGGTACGTACACTCTTAGGTTCCAAATAAACGCC
CCCCCGCTTGTTAATTTTTCGAAAATTTTCCAACCCCCCTGGACCTTATT
AGGACCCCCCGGAGCAACGCATATGAAGGCCGTTGCCATGGACAACAAAC
AAGCGGCACAGATGAGCGTGCTTCCAGCAGACTTGCATTACGAAACTGAA
AGCCTCTTCAAATTATCAACAAGAACATTTGTATCGACAAAACGATTTCC
ACGACAAACGCCTCAAAAATGTCGACAAAGAAAACACAGATTCGTATTGA
TTTTGACGAAGAAATCGACCTGAAGAAACACTTTACCACTGGAAGGAGAC
CAAATGTTTGGTACTACGGGAACTTCACACATCGCTCTTTCGTTGAACCC
AAGCGAATACTCTTACTTCAGTCAAGATCACATGAAAATGTGGGCTGGTC
CTCTGCATTGGAAAGTCAAGGCGAAATCAAAAGAACGATGCATTAGATGA
TTTACAATTTGGTCACCAAGGTGCCGCTATCCCTGATAATGGAATGTCAT
CAAAATGGAGAGCTTTGACACTGGAGGTTGTGGTGGTATGGACGACTTCA
GTGATAATGATGAAAGGATTAAACGACAATCAGACGCAGTTGATCTGAAA
AACGAAGGTACGTACACTCTTAGGTTCCAAATAAACGCCCCCCCGCTTGT
TAATTTTTCGAAAATTTTCCAACCCCCCTGGACCTTATTAGGACCCCCCG
GAGCAACGCATATGAAGGCCGTTGCCATGGACAACAAACAAGCGGCACAG
ATGAGCGTGCTTCCAGCAGACTTGCATTACGAAACTGAAAGCCTCTTCAA
ATTATCAACAAGAACATTTGTATCGACAAAACGATTTCCACGACAAACGC
CTCAAAAATGTCGACAAAGAAAACACAGATTCGTATTGATTTTGACGAAG
AAATCGACCTGAAGAAACACTTTACCACTGGAAGGAGACCAAATGTTTGG
TACTACGGGAACTTCACACATCGCTCTTTCGTTGAACCCAAGCGAATACT
CTTACTTCAGTCAAGATCACATGAAAATGTGGGCTGGTCCTCTGCATTGG
AAAGTCAAGGCGAAATCAAAAGAACGATGCATTAGATGATTTACAATTTG
GTCACCAAGGTGCCGCTATCCCTGATAATGGAATGTCATCAAAATGGAGA
GCTTTGACACTGGAGGTTGTGGTGGTATGGACGACTTCAGTGATAATGAT
GAAAGGATTAAACGACAATCAGACGCAGTTGATCTGAAAAACGAAGGTAC
GTACACTCTTAGGTTCCAAATAAACGCCCCCCCGCTTGTTAATTTTTCGA
AAATTTTCCAACCCCCCTGGACCTTATTAGGACCCCCCGGAGCAACGCAT
ATGAAGGCCGTTGCCATGGACAACAAACAAGCGGCACAGATGAGCGTGCT
TCCAGCAGACTTGCATTACGAAACTGAAAGCCTCTTCAAATTATCAACAA
GAACATTTGTATCGACAAAACGATTTCCACGACAAACGCCTCAAAAATGT
CGACAAAGAAAACACAGATTCGTATTGATTTTGACGAAGAAATCGACCTG
AAGAAACACTTTACCACTGGAAGGAGACCAAATGTTTGGTACTACGGGAA
CTTCACACATCGCTCTTTCGTTGAACCCAAGCGAATACTCTTACTTCAGT
CAAGATCACATGAAAATGTGGGCTGGTCCTCTGCATTGGAAAGTCAAGGC
GAAATCAAAAGAACGATGCATTAGATGATTTACAATTTGGTCACCAAGGT
GCCGCTATCCCTGATAATGGAATGTCATCAAAATGGAGAGCTTTGACACT
GGAGGTTGTGGTGGTATGGACGACTTCAGTGATAATGATGAAAGGATTAA
ACGACAATCAGACGCAGTTGATCTGAAAAACGAAGGTACGTACACTCTTA
GGTTCCAAATAAACGCCCCCCCGCTTGTTAATTTTTCGAAAATTTTCCAA
CCCCCCTGGACCTTATTAGGACCCCCCGGAGCAACGCATATGAAGGCCGT
TGCCATGGACAACAAACAAGCGGCACAGATGAGCGTGCTTCCAGCAGACT
TGCATTACGAAACTGAAAGCCTCTTCAAATTATCAACAAGAACATTTGTA
TCGACAAAACGATTTCCACGACAAACGCCTCAAAAATGTCGACAAAGAAA
ACACAGATTCGTATTGATTTTGACGAAGAAATCGACCTGAAGAAACACTT
TACCACTGGAAGGAGACCAAATGTTTGGTACTACGGGAACTTCACACATC
GCTCTTTCGTTGAACCCAAGCGAATACTCTTACTTCAGTCAAGATCACAT
GAAAATGTGGGCTGGTCCTCTGCATTGGAAAGTCAAGGCGAAATCAAAAG
AACGATGCATTAGATGATTTACAATTTGGTCACCAAGGTGCCGCTATCCC
TGATAATGGAATGTCATCAAAATGGAGAGCTTTGACACTGGAGGTTGTGG
TGGTATGGACGACTTCAGTGATAATGATGAAAGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_025595	XLOC_025595	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00041662-protein	TCONS_00041662-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002959	supercontig	sc0002959:8191..11850 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.3303	19.7847	6.42767	5.23993	80.0184	69.7488	33.8879	39.6628	22.5123	26.2727	19.2708	14.0931	14.2874	13.0288	8.98422	11.1607	17.3394	13.9643	6.70144	6.97608	8.59948	9.4548	19.29	18.3412	29.1491	41.3349	7.9863	6.79726	12.8283	15.8691

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR022816	Condensin_barren_su2

Vocabulary: **Biological Process**
Term	Definition
GO:0007076	mitotic chromosome condensation

Vocabulary: **Cellular Component**
Term	Definition
GO:0000796	condensin complex

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007076	mitotic chromosome condensation
cellular_component	GO:0000796	condensin complex

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00041662 vs. Swiss-Prot (Human)

BLAST of TCONS_00041662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00041662 (transcript) - C. hemisphaerica