TCONS_00041660 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041660
Unique NameTCONS_00041660
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041660 ID=TCONS_00041660|Name=TCONS_00041660|organism=Clytia hemisphaerica|type=transcript|length=254bp
AAATAATTCGATACGGGATGCTGTTTGGACCAGTTGCCTTATTTTCACTG
AGAGACATGAGAGTTTTGATGACTTCTGGTTTTGAAGCTGGAGCAATGAA
AAAGTCATTAGAATTTCGATTTTCGTTCTTTAGCCACTCTGAGAAATGAT
CACGCGTAAAAGGAATTTTTGAACGAACTTCACCTGCAATGGTTGAAAAG
AAATCGTTGAAAGCTTTAGATACTTCTTCAGGGTTGGAAGATAAAGAATC
ATTG
Run BLAST on NCBI

transcript from alignment at sc0002958:10123..10376

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041660 ID=TCONS_00041660|Name=TCONS_00041660|organism=Clytia hemisphaerica|type=transcript|length=254bp|location=Sequence derived from alignment at sc0002958:10123..10376 (Clytia hemisphaerica)
CAATGATTCTTTATCTTCCAACCCTGAAGAAGTATCTAAAGCTTTCAACG
ATTTCTTTTCAACCATTGCAGGTGAAGTTCGTTCAAAAATTCCTTTTACG
CGTGATCATTTCTCAGAGTGGCTAAAGAACGAAAATCGAAATTCTAATGA
CTTTTTCATTGCTCCAGCTTCAAAACCAGAAGTCATCAAAACTCTCATGT
CTCTCAGTGAAAATAAGGCAACTGGTCCAAACAGCATCCCGTATCGAATT
ATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025593XLOC_025593Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041660-exon-sc0002958-1491911889:10123..10376TCONS_00041660-exon-sc0002958-1491911889:10123..10376Clytia hemisphaericaexon
TCONS_00041660-exon-sc0002958-1510915933:10123..10376TCONS_00041660-exon-sc0002958-1510915933:10123..10376Clytia hemisphaericaexon
TCONS_00041660-exon-sc0002958-1575043694:10123..10376TCONS_00041660-exon-sc0002958-1575043694:10123..10376Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002958supercontigsc0002958:10123..10376 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43989	1.40412	3.26065	0.797508	0	0	0.925606	0.866541	1.21337	0	0	0.958962	0	0	0	0.438716	2.70231	0	0.76532	4.00426	0.696086	0	0.825477	2.25144	0	2.06959	0.987191	3.16067	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041660 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top