TCONS_00041659 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041659
Unique NameTCONS_00041659
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length842

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041659 ID=TCONS_00041659|Name=TCONS_00041659|organism=Clytia hemisphaerica|type=transcript|length=842bp
CGTGATCATATCTTTCTCATCCCTAACACAGAGTTTCGACTACGATGAAT
ATTTTGCAGACCAGAGTGacagaagaatgaaaaagaggAAGTGGTTCTTC
TGCTATCATTTCTTATAGTTTCTTGGGGACTGATCATTTTGTTCGTTCAA
TTCTTAAATGACTAGAATTTACCTCTCGTTAATTAAAATCTTACCCTCAC
AGTAACAACATTTTGACTGCGGTTTTACGCAAGGGTCGTCAACTGTCACA
AAGCTCTTTTTGATAATGTTGTGAAGTTAATCATTTCAGTACTATTCCAT
TTTTTTTGCCCAGTCTTTTGTGATAAAAATGTATAAGGGTTGTTTGAAAA
CACTTGATGAAGGTCAAAATTACTCTAAAAGATTGACGTTGGTAGTTCAA
TGATGGTTTAATGTTTTAGTTCGATAAGTCAGTGGCTGGATGAAACGATT
TCTATCAGTTTCAATGACAGAAGTGAAAACTTAAACCGATTTCTCTGGCA
TGGATGTATTTTGTATCATCGAAAGAACGCGTCGATGTAATTTTCTGTGA
AAATGCTTTTCAAGTTGAAAGCTAACAGAAAAATATGTTATTCGACATTG
TTCGTTATTTCCTCTTATTTCCAAGTTTTCCAGCCTAACTCATTGTTTTG
GTTGGATCTTCAAGGTGTTTCACAGTATCAAATATTGGTCCAGagaccaa
aatagaaaaagtttcaactttgtAGAGAGAGAGAAGTCATGGTCAAAATC
AAAGTAGCTTTGTTATGATAAAGGCGACAGACTAGAGAGAagttaacgag
cacaaaactaGAAATCAATTTTGCAGTGTTACACTGTTTACA
Run BLAST on NCBI

transcript from alignment at sc0002957:11382..12223

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041659 ID=TCONS_00041659|Name=TCONS_00041659|organism=Clytia hemisphaerica|type=transcript|length=842bp|location=Sequence derived from alignment at sc0002957:11382..12223 (Clytia hemisphaerica)
TGTAAACAGTGTAACACTGCAAAATTGATTTCtagttttgtgctcgttaa
ctTCTCTCTAGTCTGTCGCCTTTATCATAACAAAGCTACTTTGATTTTGA
CCATGACTTCTCTCTCTCTacaaagttgaaactttttctattttggtctC
TGGACCAATATTTGATACTGTGAAACACCTTGAAGATCCAACCAAAACAA
TGAGTTAGGCTGGAAAACTTGGAAATAAGAGGAAATAACGAACAATGTCG
AATAACATATTTTTCTGTTAGCTTTCAACTTGAAAAGCATTTTCACAGAA
AATTACATCGACGCGTTCTTTCGATGATACAAAATACATCCATGCCAGAG
AAATCGGTTTAAGTTTTCACTTCTGTCATTGAAACTGATAGAAATCGTTT
CATCCAGCCACTGACTTATCGAACTAAAACATTAAACCATCATTGAACTA
CCAACGTCAATCTTTTAGAGTAATTTTGACCTTCATCAAGTGTTTTCAAA
CAACCCTTATACATTTTTATCACAAAAGACTGGGCAAAAAAAATGGAATA
GTACTGAAATGATTAACTTCACAACATTATCAAAAAGAGCTTTGTGACAG
TTGACGACCCTTGCGTAAAACCGCAGTCAAAATGTTGTTACTGTGAGGGT
AAGATTTTAATTAACGAGAGGTAAATTCTAGTCATTTAAGAATTGAACGA
ACAAAATGATCAGTCCCCAAGAAACTATAAGAAATGATAGCAGAAGAACC
ACTTcctctttttcattcttctgtCACTCTGGTCTGCAAAATATTCATCG
TAGTCGAAACTCTGTGTTAGGGATGAGAAAGATATGATCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025592XLOC_025592Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041659-exon-sc0002957-1491911889:11382..12223TCONS_00041659-exon-sc0002957-1491911889:11382..12223Clytia hemisphaericaexon
TCONS_00041659-exon-sc0002957-1510915933:11382..12223TCONS_00041659-exon-sc0002957-1510915933:11382..12223Clytia hemisphaericaexon
TCONS_00041659-exon-sc0002957-1575043694:11382..12223TCONS_00041659-exon-sc0002957-1575043694:11382..12223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002957supercontigsc0002957:11382..12223 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.0901	2.07839	1.5673	1.16548	0.453495	0.625728	0.216172	0.289142	0	0.0585016	0	0	0	0	0	0.0341535	0	0	0	0.124691	0	0	0	0.205448	0.0601752	0.10741	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041659 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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