TCONS_00041658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041658
Unique NameTCONS_00041658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041658 ID=TCONS_00041658|Name=TCONS_00041658|organism=Clytia hemisphaerica|type=transcript|length=327bp
AAACACAACCTTTTTCGTGCTACAGTCGAATCAGTGCTTTTTTATGGTGC
ACTaacatcagcatgaaaatacttTTCAATGGTATATAGACATTCATCAA
TATAATGGAGCAAATGTCAATGCTTTGGACAGTGATGACGTTATTTTGAT
ACCTTCTATCACTTTTTACTCGTACATTGCACATTACTTAttagattttc
agactttttcgtgaTTAATGAAAAATCCTCttcaataatttgaagcaaaa
tgtcaaatttttggtggtgatgatgacatcattttaacacCTTCTGTCCC
CTTTTACtcacattgagtacattttat
Run BLAST on NCBI

transcript from alignment at sc0002956:8909..9235

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041658 ID=TCONS_00041658|Name=TCONS_00041658|organism=Clytia hemisphaerica|type=transcript|length=327bp|location=Sequence derived from alignment at sc0002956:8909..9235 (Clytia hemisphaerica)
ataaaatgtactcaatgtgaGTAAAAGGGGACAGAAGgtgttaaaatgat
gtcatcatcaccaccaaaaatttgacattttgcttcaaattattgaaGAG
GATTTTTCATTAAtcacgaaaaagtctgaaaatctaaTAAGTAATGTGCA
ATGTACGAGTAAAAAGTGATAGAAGGTATCAAAATAACGTCATCACTGTC
CAAAGCATTGACATTTGCTCCATTATATTGATGAATGTCTATATACCATT
GAAaagtattttcatgctgatgttAGTGCACCATAAAAAAGCACTGATTC
GACTGTAGCACGAAAAAGGTTGTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025591XLOC_025591Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041658-exon-sc0002956-1491911889:8909..9235TCONS_00041658-exon-sc0002956-1491911889:8909..9235Clytia hemisphaericaexon
TCONS_00041658-exon-sc0002956-1510915933:8909..9235TCONS_00041658-exon-sc0002956-1510915933:8909..9235Clytia hemisphaericaexon
TCONS_00041658-exon-sc0002956-1575043694:8909..9235TCONS_00041658-exon-sc0002956-1575043694:8909..9235Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002956supercontigsc0002956:8909..9235 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.92153	0.684585	1.08961	0.551528	0.810872	0.961143	0.488576	1.12943	1.52008	0.313812	0.304593	0.400455	0.6218	1.40989	0.170716	0.916022	0.451386	0.231328	0.958776	0.358907	3.759	1.00229	1.37885	0.375428	0	1.72849	0.932367	1.31987	2.38796	1.35992
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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