TCONS_00041650 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041650
Unique NameTCONS_00041650
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length446

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041650 ID=TCONS_00041650|Name=TCONS_00041650|organism=Clytia hemisphaerica|type=transcript|length=446bp
tgagagaaaaattaaaataaaattagaagATTTAAATCAAAACCAATGAA
TCAAGCATAAACACATGCTGAATGTGAGGAAGCAGTTAAGCGAATAACTT
gactaaattcaaaatttcatcacagaagatgaaaaaagttgtttatcaag
ctgaaaagttttgaaaacaaagcaaacaaacgGAATATTGTCTAGATGTT
TCAAGAAATGTACCGAAGAAGAGGGTATTAACACAACTGCGTAATGTCAA
ACAGAACTGTTTTAATGAAGCACAAACAATCGAAATGAACAAAAATTGGT
ATTGCACAAGTGGTTGGAAAGAATGCCCAAAATGAAAATATGCACATGGC
TGCATAAAGAAATAAACAtaacatttaaaagaaaaaaaaatattgtctaG
ATGTTTCAAGAATTGTACCCAAGATGAGGTAAACATAAACAATGGA
Run BLAST on NCBI

protein sequence of TCONS_00041650-protein

>TCONS_00041650-protein ID=TCONS_00041650-protein|Name=TCONS_00041650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
PLFMFTSSWVQFLKHLDNIFFSFKCYVYFFMQPCAYFHFGHSFQPLVQYQ
FLFISIVCASLKQFCLTLRSCVNTLFFGTFLETSRQYSVCLLCFQNFSA
Run BLAST on NCBI

transcript from alignment at sc0002953:538..983

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041650 ID=TCONS_00041650|Name=TCONS_00041650|organism=Clytia hemisphaerica|type=transcript|length=446bp|location=Sequence derived from alignment at sc0002953:538..983 (Clytia hemisphaerica)
TCCATTGTTTATGTTTACCTCATCTTGGGTACAATTCTTGAAACATCtag
acaatatttttttttcttttaaatgttaTGTTTATTTCTTTATGCAGCCA
TGTGCATATTTTCATTTTGGGCATTCTTTCCAACCACTTGTGCAATACCA
ATTTTTGTTCATTTCGATTGTTTGTGCTTCATTAAAACAGTTCTGTTTGA
CATTACGCAGTTGTGTTAATACCCTCTTCTTCGGTACATTTCTTGAAACA
TCTAGACAATATTCcgtttgtttgctttgttttcaaaacttttcagcttg
ataaacaacttttttcatcttctgtgatgaaattttgaatttagtcAAGT
TATTCGCTTAACTGCTTCCTCACATTCAGCATGTGTTTATGCTTGATTCA
TTGGTTTTGATTTAAATcttctaattttattttaatttttctctca

Coding sequence (CDS) from alignment at sc0002953:538..983

>TCONS_00041650 ID=TCONS_00041650|Name=TCONS_00041650|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0002953:538..983 (Clytia hemisphaerica)
CCATTGTTTATGTTTACCTCATCTTGGGTACAATTCTTGAAACATCtaga
caatatttttttttcttttaaatgttaTGTTTATTTCTTTATGCAGCCAT
GTGCATATTTTCATTTTGGGCATTCTTTCCAACCACTTGTGCAATACCAA
TTTTTGTTCATTTCGATTGTTTGTGCTTCATTAAAACAGTTCTGTTTGAC
ATTACGCAGTTGTGTTAATACCCTCTTCTTCGGTACATTTCTTGAAACAT
CTAGACAATATTCcgtttgtttgctttgttttcaaaacttttcagcttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025583XLOC_025583Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041650-proteinTCONS_00041650-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041650-exon-sc0002953-1491911889:538..983TCONS_00041650-exon-sc0002953-1491911889:538..983Clytia hemisphaericaexon
TCONS_00041650-exon-sc0002953-1510915933:538..983TCONS_00041650-exon-sc0002953-1510915933:538..983Clytia hemisphaericaexon
TCONS_00041650-exon-sc0002953-1575043694:538..983TCONS_00041650-exon-sc0002953-1575043694:538..983Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002953supercontigsc0002953:538..983 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.291953	1.05924	0	3.05272	1.60409	1.89749	3.70046	0	0	0	0.398784	0	0	0.577737	0.212948	0.559058	0	0.754273	0	0.255793	0.525839	0.208478	0.247096	0	0	0.53836	1.47223	0.538098	0.846516
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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